SNP Report

Basic Info

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 18)

rs_ID |
Functional Annotation |
r2[population] |
rs2100280
|
intron_variant; NMD_transcript_variant |
0.931[CHB]; 0.866[CHD]
|
rs2198144
|
intron_variant; NMD_transcript_variant |
0.931[CHB]; 0.937[JPT]; 0.887[YRI]
|
rs12538830
|
downstream_gene_variant; intron_variant; NMD_transcript_variant |
0.869[CHB]; 0.866[CHD]
|
rs3735274
|
intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant |
0.869[CHB]; 0.908[CHD]
|
rs4585697
|
downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant |
0.931[CHB]; 0.866[CHD]
|
rs17152020
|
intron_variant; NMD_transcript_variant; upstream_gene_variant |
0.813[CEU]; 0.914[GIH]
|
rs3779084
|
intron_variant; NMD_transcript_variant |
0.813[CEU]; 0.942[GIH]
|
rs10249982
|
downstream_gene_variant; intron_variant; NMD_transcript_variant |
0.863[CHB]
|
rs7809758
|
intron_variant; NMD_transcript_variant |
0.931[CHB]; 0.955[CHD]; 0.937[JPT]; 0.879[LWK]; 0.882[MKK]
|
rs1817074
|
intron_variant; NMD_transcript_variant |
0.857[CHB]; 0.937[JPT]; 0.926[YRI]
|
rs7808025
|
intron_variant; NMD_transcript_variant |
1.0[CEU]; 0.961[TSI]; 0.866[ASW]; 1.0[CHB]; 0.908[CHD]; 1.0[JPT]; 0.952[MEX]
|
rs6592963
|
intron_variant; NMD_transcript_variant |
0.931[CHB]; 0.866[CHD]
|
rs880028
|
intron_variant; NMD_transcript_variant |
0.813[CEU]; 0.942[GIH]
|
rs4947584
|
intron_variant; NMD_transcript_variant |
0.807[ASW]; 0.931[CHB]; 0.955[CHD]; 0.937[JPT]; 0.835[LWK]; 0.851[MKK]
|
rs10244632
|
intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant |
0.869[CHB]
|
rs4490786
|
intron_variant; nc_transcript_variant; NMD_transcript_variant; splice_region_variant |
0.813[CEU]; 0.914[GIH]
|
rs9918702
|
downstream_gene_variant; intron_variant; NMD_transcript_variant |
0.869[CHB]
|
rs12535064
|
downstream_gene_variant; intron_variant; NMD_transcript_variant |
0.869[CHB]; 0.861[CHD]
|