ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs6427957 dbSNP Ensembl
Location Chr1:202562427(Fwd)
Variant Alleles G/A
Ancestral Allele G
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000367268; ENST00000367267)
downstream_gene_variant(ENST00000406302; ENST00000367270; ENST00000336894; ENST00000391959)
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Sanchez-Mora, C., 2012 P-value=0.016, Genotype12+22 vs11: P-value=0.004, OR(95%CI)=...... P-value=0.016, Genotype12+22 vs11: P-value=0.004, OR(95%CI)=1.47(1.13¨C1.92); Genotypes22 vs11+12: P-value=0.309, OR(95%CI)=1.15(0.88¨C1.52); allelic P-value=0,017, OR(95%CI)=1.22(1.04¨C1.43) More... Nine SNPs located in five genes displayed nominal associatio...... Nine SNPs located in five genes displayed nominal associations in the comparison of ADHD children and controls More... Significant

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 1)


SNPs in LD with rs6427957 (count: 27) View in gBrowse (chr1:202365332..202569877 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 27)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014