SNP Report

Basic Info
Name |
rs604030
dbSNP
Ensembl
|
Location |
chr1:23518227(Fwd) |
Variant Alleles |
T/C |
Ancestral Allele |
C |
Functional Annotation |
downstream_gene_variant; intron_variant.
|
Consequence to Transcript |
downstream_gene_variant(ENST00000374619) intron_variant(ENST00000314113) |
No. of Studies |
1 (significant: 1; non-significant: 0; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 29)

rs_ID |
Functional Annotation |
r2[population] |
rs10917363
|
|
0.947[CHB]; 0.92[JPT]
|
rs12027190
|
|
0.841[CHB]
|
rs641032
|
downstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs586589
|
upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs10799793
|
|
0.949[CHB]; 0.928[JPT]
|
rs2274687
|
5_prime_UTR_variant; intron_variant; upstream_gene_variant |
0.947[CHB]; 1.0[JPT]
|
rs588387
|
upstream_gene_variant |
0.84[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs674386
|
upstream_gene_variant |
0.84[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs10917351
|
intron_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs6691404
|
downstream_gene_variant; intron_variant |
1.0[CHB]; 1.0[JPT]
|
rs7543975
|
downstream_gene_variant; intron_variant; nc_transcript_variant |
0.947[CHB]; 1.0[JPT]
|
rs12067252
|
intron_variant |
0.93[CHB]
|
rs2746561
|
|
1.0[CHB]; 1.0[JPT]
|
rs1738468
|
|
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs12044504
|
downstream_gene_variant; intron_variant |
1.0[CHB]; 1.0[JPT]
|
rs623988
|
3_prime_UTR_variant; intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs12087937
|
intron_variant |
1.0[CHB]; 1.0[JPT]
|
rs11578046
|
intron_variant |
0.961[CEU]; 0.949[CHB]; 1.0[JPT]
|
rs7532266
|
|
0.84[CEU]; 0.896[CHB]; 0.92[JPT]
|
rs2806555
|
intron_variant |
1.0[CHB]; 1.0[JPT]
|
rs1757042
|
upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs643492
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs7548692
|
intron_variant; nc_transcript_variant |
0.96[CEU]; 0.949[CHB]; 1.0[JPT]
|
rs2806566
|
upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs2776815
|
|
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs12038873
|
intron_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs3845521
|
downstream_gene_variant; intron_variant |
1.0[CHB]; 1.0[JPT]
|
rs2806570
|
|
0.84[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs1738467
|
upstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|