ADHDgene Database

SNP Report

Basic Info

Name	rs563976 dbSNP Ensembl
Location	Chr17:27905673(Fwd)
Variant Alleles	A/G
Ancestral Allele	G
Functional Annotation	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000577466; ENST00000583413; ENST00000579536; ENST00000335356) intron_variant(ENST00000225394; ENST00000581925; ENST00000581474; ENST00000586574; ENST00000585148; ENST00000579937; ENST00000473217; ENST00000394869; ENST00000581348) nc_transcript_variant(ENST00000581925; ENST00000581474; ENST00000586574; ENST00000473217) upstream_gene_variant(ENST00000578670; ENST00000491377; ENST00000578266)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
GIT1	G protein-coupled receptor kinase interacting ArfGAP 1	17p11.2	2(1/1/0)

SNPs in LD with rs563976 (count: 1) View in gBrowse (chr17:27901975..27905673 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs550818	NMD_transcript_variant; downstream_gene_variant; intron_variant; missense_variant; nc_transcript_variant	2(1/1/0)	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.923[LWK]; 1.0[MEX]; 0.865[MKK]; 1.0[TSI]; 1.0[YRI]