ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs4570625 dbSNP Ensembl
Location Chr12:72331923(Fwd)
Variant Alleles G/T
Ancestral Allele T
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000333850; ENST00000546576)
No. of Studies 3 (significant: 1; non-significant: 2; trend: 0)
Source Literature-origin

SNP related studies (count: 3)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Brookes K, 2006 A/C UNPHASED TDT P-value=0.459; WHAP TDT P-value=0.347 UNPHASED TDT P-value=0.459; WHAP TDT P-value=0.347 no significant association was observed no significant association was observed Non-significant
Walitza S, 2005 G/T allelic PDT P-value (two-sided)=0.0497 allelic PDT P-value (two-sided)=0.0497 significant preferential transmissions were detected for the...... significant preferential transmissions were detected for the G allele More... Significant
Shim SH, 2010 G:T Multivariate model for genotype 'GG' OR=1.00; genotype 'GT' ...... Multivariate model for genotype 'GG' OR=1.00; genotype 'GT' P-value=0.630 , OR=1.24; genotype 'TT' P-value=0.812, OR=1.13 ; Multivariate model for allele 'G' OR=1.00; allele 'T' P-value=0.814, OR=1.06 More... no differences in either genotype distribution or in allele ...... no differences in either genotype distribution or in allele frequencies between the ADHD patients and the controls More... Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs4570625 (count: 7) View in gBrowse (chr12:72329106..72340073 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 4)

LD-proxies (count: 3)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014