ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs4403552 dbSNP Ensembl
Location	ChrX:7243304(Fwd)
Variant Alleles	G/A
Ancestral Allele	G
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000217961)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Brookes KJ, 2008(b)			TDT P-value=0.71, OR=1.07 TDT P-value=0.71, OR=1.07	not significantly associated not significantly associated	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
STS	steroid sulfatase (microsomal), isozyme S	Xp22.32	3(2/1/0)

Genes from other sources (count: 0)

SNPs in LD with rs4403552 (count: 76) View in gBrowse (chrX:7044081..7307440 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 4)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs5934769	intron_variant	1(1/0/0)	0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs5934740	intron_variant	2(0/2/0)	0.932[CHB]; 0.821[CHD]; 0.929[JPT]
rs1473666	downstream_gene_variant; intron_variant; nc_transcript_variant	1(0/1/0)	0.816[CHD]
rs6639786	intron_variant	1(1/0/0)	0.932[CHB]; 0.821[CHD]; 0.93[JPT]

LD-proxies (count: 72)

rs_ID	Functional Annotation	r²[population]
rs2694752		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs802907		0.932[CHB]; 0.93[JPT]
rs802881		0.865[CHB]; 0.859[JPT]
rs6639811	intron_variant	1.0[CHB]; 0.821[CHD]; 0.93[JPT]
rs5979076		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs802889		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs869505	intron_variant; nc_transcript_variant	0.932[CHB]; 0.863[JPT]
rs12388823	intron_variant; nc_transcript_variant	0.932[CHB]; 0.815[CHD]; 0.863[JPT]
rs6530056	intron_variant; nc_transcript_variant; upstream_gene_variant	0.932[CHB]; 0.813[CHD]; 0.863[JPT]
rs5934850	intron_variant	0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs5934881	intron_variant	0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs1638521		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs2098072	intron_variant	0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs5933830	intron_variant	0.932[CHB]; 0.815[CHD]; 0.93[JPT]
rs802892		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs5934904	intron_variant	0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs6530060		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs7881052		0.932[CHB]; 0.93[JPT]
rs3923341	intron_variant	1.0[CHB]; 0.82[CHD]; 0.93[JPT]
rs5933793	intron_variant	0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs5934743	intron_variant	0.932[CHB]; 0.93[JPT]
rs6639817	intron_variant	0.934[CHB]; 0.93[JPT]
rs802901		0.868[CHB]; 0.821[CHD]; 0.859[JPT]
rs941171	downstream_gene_variant; upstream_gene_variant	0.932[CHB]; 0.93[JPT]
rs5934937	intron_variant	1.0[CHB]; 0.93[JPT]
rs5933826	intron_variant	0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs1967431	intron_variant; nc_transcript_variant; upstream_gene_variant	0.932[CHB]; 0.863[JPT]
rs2694751		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs802904		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs5934842	intron_variant	0.932[CHB]; 0.93[JPT]
rs7892767		0.924[CHB]; 0.928[JPT]
rs5934678		0.854[CHB]; 0.815[JPT]
rs809104		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs802915		0.932[CHB]; 0.93[JPT]
rs5978404	intron_variant	0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs802890		1.0[CHB]; 0.916[JPT]
rs7888782		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs4830627		0.932[CHB]; 0.93[JPT]
rs4830410		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs802913		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs7887251	intron_variant; nc_transcript_variant	0.932[CHB]; 0.863[JPT]
rs4595309	intron_variant	0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs802905		0.932[CHB]; 0.93[JPT]
rs802894		0.932[CHB]; 0.93[JPT]
rs802888		0.932[CHB]; 0.816[CHD]; 0.93[JPT]
rs802916		0.927[CHB]; 0.92[JPT]
rs802909		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs802893		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs2072326	intron_variant	0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs5935099		1.0[CHB]; 0.877[CHD]; 1.0[JPT]
rs727520		0.932[CHB]; 0.93[JPT]
rs5934913	intron_variant	1.0[CHB]; 0.93[JPT]
rs5979051	downstream_gene_variant; upstream_gene_variant	0.932[CHB]; 0.93[JPT]
rs802896		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs802897		0.932[CHB]; 0.93[JPT]
rs4132409	intron_variant	0.932[CHB]; 0.93[JPT]
rs6530059		0.932[CHB]; 0.93[JPT]
rs5978405	intron_variant	1.0[CHB]; 0.821[CHD]; 0.93[JPT]
rs5978312		0.93[CHB]; 0.922[JPT]
rs5934918	intron_variant	1.0[CHB]; 0.821[CHD]; 0.93[JPT]
rs12008511		0.932[CHB]; 0.93[JPT]
rs5978295	intron_variant; nc_transcript_variant	0.932[CHB]; 0.821[CHD]; 0.863[JPT]
rs5934907	intron_variant	0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs2531956		0.932[CHB]; 0.93[JPT]
rs802903		0.932[CHB]; 0.821[CHD]; 0.929[JPT]
rs6530058	downstream_gene_variant; upstream_gene_variant	0.932[CHB]; 0.93[JPT]
rs707762		0.932[CHB]; 0.927[JPT]
rs5979036	intron_variant; nc_transcript_variant	0.932[CHB]; 0.818[CHD]; 0.863[JPT]
rs5979331	intron_variant	1.0[CHB]; 0.93[JPT]
rs17268974	intron_variant	1.0[CHB]; 0.921[JPT]
rs1880879		0.932[CHB]; 0.821[CHD]; 0.93[JPT]
rs802898		0.932[CHB]; 0.821[CHD]; 0.93[JPT]