ADHDgene Database

SNP Report

Basic Info

Name	rs3776579 dbSNP Ensembl
Location	Chr5:36654493(Fwd)
Variant Alleles	T/G
Ancestral Allele	T
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000514563; ENST00000509272; ENST00000265113; ENST00000381918; ENST00000427100) nc_transcript_variant(ENST00000514563; ENST00000509272)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Turic D, 2005(a)	G/T		P-value=0.36 for pooled genotyping P-value=0.36 for pooled genotyping	not significantly associated with ADHD not significantly associated with ADHD	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC1A3	solute carrier family 1 (glial high affinity glutamate transporter), member 3	5p13	2(1/1/0)

SNPs in LD with rs3776579 (count: 4) View in gBrowse (chr5:36650706..36654493 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs3776577	intron_variant; nc_transcript_variant	0.814[CHB]; 1.0[MEX]; 0.911[TSI]
rs3776578	intron_variant; nc_transcript_variant	0.911[CHB]; 0.917[CHD]; 1.0[GIH]; 0.92[JPT]; 1.0[MEX]; 0.911[TSI]
rs16903247	intron_variant; nc_transcript_variant	1.0[ASW]; 0.911[CHB]; 1.0[CHD]; 1.0[GIH]; 0.92[JPT]; 1.0[MEX]; 0.814[MKK]; 0.911[TSI]
rs1622132	intron_variant; nc_transcript_variant	0.814[CHB]