ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs2865793 dbSNP Ensembl
Location	chr20:58799401(Fwd)
Variant Alleles	T/G
Ancestral Allele	T
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000421257; ENST00000427820; ENST00000431181; ENST00000432910; ENST00000437035; ENST00000458422) nc_transcript_variant(ENST00000421257; ENST00000427820; ENST00000431181; ENST00000432910; ENST00000437035; ENST00000458422)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (a)	T:G		P-value=1.91E-05 P-value=1.91E-05	one of top 50 hits from the Genome-Wide Attention-Deficit/Hy...... one of top 50 hits from the Genome-Wide Attention-Deficit/Hyperactivity Disorder (ADHD) meta-analysis More...	Trend

SNP related genes (count: 0)

SNPs in LD with rs2865793 (count: 24) View in gBrowse (chr20:58797699..58829160 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 24)

rs_ID	Functional Annotation	r²[population]
rs11907758	intron_variant; nc_transcript_variant	0.902[JPT]
rs6027434	intron_variant; nc_transcript_variant	1.0[CEU]; 0.968[TSI]; 0.888[CHB]; 0.902[JPT]; 0.864[GIH]
rs11696475	intron_variant; nc_transcript_variant	0.853[JPT]
rs6027429	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.96[YRI]
rs7262838	intron_variant; nc_transcript_variant	0.887[CEU]; 0.888[CHB]; 0.952[JPT]
rs4812161	downstream_gene_variant; intron_variant; nc_transcript_variant	0.803[MEX]
rs6027432	intron_variant; nc_transcript_variant	0.817[CHD]; 0.902[JPT]; 1.0[MEX]
rs6092909	downstream_gene_variant; intron_variant; nc_transcript_variant	0.83[CHB]; 0.856[MEX]
rs6100820	intron_variant; nc_transcript_variant	0.94[CEU]
rs6100819	intron_variant; nc_transcript_variant	0.943[CEU]; 0.871[TSI]
rs17791711	intron_variant; nc_transcript_variant	0.835[CHB]; 0.969[CHD]; 0.952[JPT]
rs6027417	intron_variant; nc_transcript_variant	0.905[TSI]; 0.945[GIH]; 0.895[MEX]
rs6100836	downstream_gene_variant; intron_variant; nc_transcript_variant	0.831[CEU]; 0.83[CHB]
rs6015696	intron_variant; nc_transcript_variant	1.0[CEU]; 0.96[YRI]
rs6027433	intron_variant; nc_transcript_variant	1.0[CEU]; 0.888[CHB]; 0.902[JPT]
rs1551763	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.959[YRI]
rs11697799	intron_variant; nc_transcript_variant	0.905[JPT]
rs8120039	intron_variant; nc_transcript_variant	0.853[JPT]
rs6027437	intron_variant; nc_transcript_variant	0.943[CEU]; 0.874[TSI]; 0.853[JPT]; 0.948[MEX]
rs6027436	intron_variant; nc_transcript_variant	0.846[TSI]; 0.853[JPT]; 0.947[MEX]
rs6027426	intron_variant; nc_transcript_variant	0.937[CEU]
rs6100804	intron_variant; nc_transcript_variant	0.95[JPT]
rs11698869	intron_variant; nc_transcript_variant	0.902[JPT]
rs6100803	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]