ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs2865793 dbSNP Ensembl
Location	Chr20:58799401(Fwd)
Variant Alleles	T/G
Ancestral Allele	T
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000437035; ENST00000432910; ENST00000458422; ENST00000431181; ENST00000427820; ENST00000421257) nc_transcript_variant(ENST00000437035; ENST00000432910; ENST00000458422; ENST00000431181; ENST00000427820; ENST00000421257)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (a)	T:G		P-value=1.91E-05 P-value=1.91E-05	one of top 50 hits from the Genome-Wide Attention-Deficit/Hy...... one of top 50 hits from the Genome-Wide Attention-Deficit/Hyperactivity Disorder (ADHD) meta-analysis More...	Trend

SNP related genes (count: 0)

SNPs in LD with rs2865793 (count: 27) View in gBrowse (chr20:58797699..58829160 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 3)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs6100796	intron_variant; nc_transcript_variant	1(0/0/1)	1.0[ASW]; 1.0[CEU]; 1.0[GIH]; 1.0[LWK]; 0.947[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
rs1535028	intron_variant; nc_transcript_variant	1(0/0/1)	0.864[JPT]; 0.856[MEX]
rs7271202	intron_variant; nc_transcript_variant	1(0/0/1)	0.937[ASW]; 1.0[CEU]; 1.0[GIH]; 0.934[LWK]; 1.0[MEX]; 0.832[MKK]; 1.0[TSI]; 0.96[YRI]

LD-proxies (count: 24)

rs_ID	Functional Annotation	r²[population]
rs17791711	intron_variant; nc_transcript_variant	0.835[CHB]; 0.969[CHD]; 0.952[JPT]
rs6027434	intron_variant; nc_transcript_variant	1.0[CEU]; 0.888[CHB]; 0.864[GIH]; 0.902[JPT]; 0.968[TSI]
rs6027433	intron_variant; nc_transcript_variant	1.0[CEU]; 0.888[CHB]; 0.902[JPT]
rs7262838	intron_variant; nc_transcript_variant	0.887[CEU]; 0.888[CHB]; 0.952[JPT]
rs1551763	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.959[YRI]
rs6100819	intron_variant; nc_transcript_variant	0.943[CEU]; 0.871[TSI]
rs6100820	intron_variant; nc_transcript_variant	0.94[CEU]
rs11907758	intron_variant; nc_transcript_variant	0.902[JPT]
rs6027437	intron_variant; nc_transcript_variant	0.943[CEU]; 0.853[JPT]; 0.948[MEX]; 0.874[TSI]
rs6092909	downstream_gene_variant; intron_variant; nc_transcript_variant	0.83[CHB]; 0.856[MEX]
rs6100804	intron_variant; nc_transcript_variant	0.95[JPT]
rs6027426	intron_variant; nc_transcript_variant	0.937[CEU]
rs6027429	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.96[YRI]
rs11698869	intron_variant; nc_transcript_variant	0.902[JPT]
rs8120039	intron_variant; nc_transcript_variant	0.853[JPT]
rs4812161	downstream_gene_variant; intron_variant; nc_transcript_variant	0.803[MEX]
rs6100803	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs6015696	intron_variant; nc_transcript_variant	1.0[CEU]; 0.96[YRI]
rs6027417	intron_variant; nc_transcript_variant	0.945[GIH]; 0.895[MEX]; 0.905[TSI]
rs6027436	intron_variant; nc_transcript_variant	0.853[JPT]; 0.947[MEX]; 0.846[TSI]
rs6027432	intron_variant; nc_transcript_variant	0.817[CHD]; 0.902[JPT]; 1.0[MEX]
rs6100836	downstream_gene_variant; intron_variant; nc_transcript_variant	0.831[CEU]; 0.83[CHB]
rs11697799	intron_variant; nc_transcript_variant	0.905[JPT]
rs11696475	intron_variant; nc_transcript_variant	0.853[JPT]