ADHDgene Database

SNP Report

Basic Info

Name	rs2562581 dbSNP Ensembl
Location	Chr5:36605100(Fwd)
Variant Alleles	T/A
Ancestral Allele	T
Functional Annotation	upstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000513903; ENST00000505202; ENST00000416645; ENST00000506725; ENST00000265113; ENST00000513646; ENST00000504121; ENST00000512374; ENST00000502864; ENST00000427100; ENST00000381918)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC1A3	solute carrier family 1 (glial high affinity glutamate transporter), member 3	5p13	2(1/1/0)

SNPs in LD with rs2562581 (count: 2) View in gBrowse (chr5:36605100..36608165 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs4591778	intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.923[CEU]; 1.0[CHB]; 0.955[JPT]; 0.966[YRI]
rs2731886	upstream_gene_variant	1(0/1/0)	1.0[CEU]; 1.0[JPT]