ADHDgene Database

SNP Report

Basic Info

Name	rs2406369 dbSNP Ensembl
Location	chr5:52188389(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	downstream_gene_variant; intron_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000509174; ENST00000513737) intron_variant(ENST00000282588)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Laurin N, 2008(a)	G/A		P-value=0.663 in the catergorical analysis, P-value>0.05 in ...... P-value=0.663 in the catergorical analysis, P-value>0.05 in the quantitative analysis More...	no significant evidence of association no significant evidence of association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
ITGA1	integrin, alpha 1	5q11.1	2(0/2/0)

SNPs in LD with rs2406369 (count: 15) View in gBrowse (chr5:52179949..52193287 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs1904164	downstream_gene_variant; intron_variant	0.963[CEU]; 1.0[CHB]; 0.956[JPT]
rs6866823	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[CHB]; 0.953[JPT]
rs12514345	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[CHB]; 0.956[JPT]
rs6886001	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[CHB]; 0.953[JPT]
rs7731598	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[CHB]; 0.956[JPT]
rs1110351	downstream_gene_variant; intron_variant	0.96[CEU]; 1.0[CHB]; 0.859[JPT]; 0.927[YRI]
rs1904161	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[CHB]; 0.956[JPT]
rs1531545	splice_region_variant; synonymous_variant; upstream_gene_variant	0.92[CEU]; 1.0[CHB]; 1.0[JPT]
rs13172757	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[CHB]; 0.952[JPT]
rs9291999	downstream_gene_variant; intron_variant	0.963[CEU]; 1.0[CHB]; 0.956[JPT]
rs7731949	downstream_gene_variant; intron_variant	0.961[CEU]; 1.0[CHB]; 0.953[JPT]
rs11745366	downstream_gene_variant; intron_variant; upstream_gene_variant	0.801[CHB]
rs6871286	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[CHB]; 0.953[JPT]
rs2860365	downstream_gene_variant; intron_variant; nc_transcript_variant	0.801[CHB]
rs1904162	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[CHB]; 0.953[JPT]