SNP Report

Basic Info
Name |
rs2406369
dbSNP
Ensembl
|
Location |
chr5:52188389(Fwd) |
Variant Alleles |
A/G |
Ancestral Allele |
A |
Functional Annotation |
downstream_gene_variant; intron_variant.
|
Consequence to Transcript |
downstream_gene_variant(ENST00000509174; ENST00000513737) intron_variant(ENST00000282588) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 15)

rs_ID |
Functional Annotation |
r2[population] |
rs1904164
|
downstream_gene_variant; intron_variant |
0.963[CEU]; 1.0[CHB]; 0.956[JPT]
|
rs1904161
|
downstream_gene_variant; intron_variant |
1.0[CEU]; 1.0[CHB]; 0.956[JPT]
|
rs1110351
|
downstream_gene_variant; intron_variant |
0.96[CEU]; 1.0[CHB]; 0.859[JPT]; 0.927[YRI]
|
rs1531545
|
splice_region_variant; synonymous_variant; upstream_gene_variant |
0.92[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs6886001
|
downstream_gene_variant; intron_variant |
1.0[CEU]; 1.0[CHB]; 0.953[JPT]
|
rs12514345
|
downstream_gene_variant; intron_variant |
1.0[CEU]; 1.0[CHB]; 0.956[JPT]
|
rs1904162
|
downstream_gene_variant; intron_variant |
1.0[CEU]; 1.0[CHB]; 0.953[JPT]
|
rs6871286
|
downstream_gene_variant; intron_variant |
1.0[CEU]; 1.0[CHB]; 0.953[JPT]
|
rs11745366
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
0.801[CHB]
|
rs7731949
|
downstream_gene_variant; intron_variant |
0.961[CEU]; 1.0[CHB]; 0.953[JPT]
|
rs7731598
|
downstream_gene_variant; intron_variant |
1.0[CEU]; 1.0[CHB]; 0.956[JPT]
|
rs6866823
|
downstream_gene_variant; intron_variant |
1.0[CEU]; 1.0[CHB]; 0.953[JPT]
|
rs2860365
|
downstream_gene_variant; intron_variant; nc_transcript_variant |
0.801[CHB]
|
rs13172757
|
downstream_gene_variant; intron_variant |
1.0[CEU]; 1.0[CHB]; 0.952[JPT]
|
rs9291999
|
downstream_gene_variant; intron_variant |
0.963[CEU]; 1.0[CHB]; 0.956[JPT]
|