ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs2290070 dbSNP Ensembl
Location	chr5:44305309(Fwd)
Variant Alleles	C/G
Ancestral Allele	C
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000264664)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Laurin N, 2008(a)	C/G		P-value=0.56 in the catergorical analysis, P-value>0.05 in t...... P-value=0.56 in the catergorical analysis, P-value>0.05 in the quantitative analysis More...	no significant evidence of association no significant evidence of association	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
FGF10	fibroblast growth factor 10	5p13-p12	1(0/1/0)

Genes from other sources (count: 0)

SNPs in LD with rs2290070 (count: 39) View in gBrowse (chr5:44208409..44392131 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 39)

rs_ID	Functional Annotation	r²[population]
rs987642	intron_variant	1.0[CHB]; 0.93[JPT]
rs10473352	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs9292903	downstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs1384449	intron_variant	1.0[CEU]
rs983373	intron_variant	0.844[CHB]; 0.931[JPT]
rs2973650	intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CEU]
rs969520	intron_variant	1.0[CEU]; 0.824[CHB]; 0.931[JPT]
rs10512844	intron_variant	1.0[CHB]; 0.93[JPT]
rs2973649	intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CEU]
rs2166832		1.0[CHB]; 1.0[JPT]
rs6891282	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]; 0.844[CHB]
rs6881989	downstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs10941664	intron_variant	0.834[CHB]; 0.928[JPT]
rs1816965	intron_variant	1.0[CEU]; 1.0[CHB]; 0.931[JPT]; 1.0[YRI]
rs16874036	intron_variant	0.844[CHB]; 0.931[JPT]
rs735083	intron_variant	0.93[CEU]; 1.0[CHB]; 0.931[JPT]
rs7713769		1.0[CHB]; 1.0[JPT]
rs10473353	intron_variant	1.0[CHB]; 1.0[JPT]
rs10062585		1.0[CHB]; 1.0[JPT]
rs6892212	intron_variant	0.813[CEU]
rs1482689	intron_variant	1.0[CHB]; 0.93[JPT]
rs4866889		1.0[CHB]; 1.0[JPT]
rs2973646	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]
rs12656842		1.0[CHB]; 1.0[JPT]
rs10512835		0.811[CEU]
rs1823251	3_prime_UTR_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs16901816	intron_variant	1.0[CEU]; 0.916[CHB]; 0.93[JPT]
rs4643965		0.811[CEU]
rs4866774		0.813[CEU]
rs6451758	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs1448035	intron_variant	0.844[CHB]; 1.0[JPT]
rs10805683	intron_variant	1.0[CEU]
rs1839094		1.0[CHB]; 1.0[JPT]
rs1374962	intron_variant	1.0[CHB]; 1.0[JPT]
rs1816964	intron_variant	0.93[CEU]; 1.0[JPT]
rs1979079	downstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs10512845	intron_variant	1.0[CHB]; 0.931[JPT]
rs6881797	intron_variant	0.93[CEU]; 1.0[CHB]; 1.0[JPT]
rs2973644	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]