SNP Report

Basic Info
Name |
rs2290070
dbSNP
Ensembl
|
Location |
Chr5:44305309(Fwd) |
Variant Alleles |
C/G |
Ancestral Allele |
C |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000264664) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 39)

rs_ID |
Functional Annotation |
r2[population] |
rs735083
|
intron_variant |
0.93[CEU]; 1.0[CHB]; 0.931[JPT]
|
rs16874036
|
intron_variant |
0.844[CHB]; 0.931[JPT]
|
rs2973646
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
1.0[CEU]
|
rs2973649
|
intron_variant; nc_transcript_variant; upstream_gene_variant |
1.0[CEU]
|
rs1816965
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 0.931[JPT]; 1.0[YRI]
|
rs969520
|
intron_variant |
1.0[CEU]; 0.824[CHB]; 0.931[JPT]
|
rs7713769
|
|
1.0[CHB]; 1.0[JPT]
|
rs2973650
|
intron_variant; nc_transcript_variant; upstream_gene_variant |
1.0[CEU]
|
rs10062585
|
|
1.0[CHB]; 1.0[JPT]
|
rs10473353
|
intron_variant |
1.0[CHB]; 1.0[JPT]
|
rs4643965
|
|
0.811[CEU]
|
rs1839094
|
|
1.0[CHB]; 1.0[JPT]
|
rs6451758
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs10512835
|
|
0.811[CEU]
|
rs2166832
|
|
1.0[CHB]; 1.0[JPT]
|
rs1448035
|
intron_variant |
0.844[CHB]; 1.0[JPT]
|
rs12656842
|
|
1.0[CHB]; 1.0[JPT]
|
rs10805683
|
intron_variant |
1.0[CEU]
|
rs6881989
|
downstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs6892212
|
intron_variant |
0.813[CEU]
|
rs6881797
|
intron_variant |
0.93[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs10473352
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs987642
|
intron_variant |
1.0[CHB]; 0.93[JPT]
|
rs1374962
|
intron_variant |
1.0[CHB]; 1.0[JPT]
|
rs1482689
|
intron_variant |
1.0[CHB]; 0.93[JPT]
|
rs1823251
|
3_prime_UTR_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs4866889
|
|
1.0[CHB]; 1.0[JPT]
|
rs2973644
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
1.0[CEU]
|
rs1816964
|
intron_variant |
0.93[CEU]; 1.0[JPT]
|
rs10512844
|
intron_variant |
1.0[CHB]; 0.93[JPT]
|
rs983373
|
intron_variant |
0.844[CHB]; 0.931[JPT]
|
rs4866774
|
|
0.813[CEU]
|
rs10512845
|
intron_variant |
1.0[CHB]; 0.931[JPT]
|
rs6891282
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
1.0[CEU]; 0.844[CHB]
|
rs10941664
|
intron_variant |
0.834[CHB]; 0.928[JPT]
|
rs9292903
|
downstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs16901816
|
intron_variant |
1.0[CEU]; 0.916[CHB]; 0.93[JPT]
|
rs1384449
|
intron_variant |
1.0[CEU]
|
rs1979079
|
downstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|