ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs2254404 dbSNP Ensembl
Location Chr1:115834669(Fwd)
Variant Alleles G/T
Ancestral Allele G
Functional Annotation intron_variant; nc_transcript_variant.
Consequence to Transcript intron_variant(ENST00000425449; ENST00000369512; LRG_260_t1)
nc_transcript_variant(ENST00000425449)
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Ribases M, 2008 genotypic P-value=0.005; genotypic P-value=0.003, OR=1.52 (1...... genotypic P-value=0.005; genotypic P-value=0.003, OR=1.52 (1.15-2.01) in dominant model; genotypic P-value=0.65 in recessive model; allelic P-value=0.038, OR=1.25 (1.01-1.54) in Children More... provided evidence of association with childhood ADHD provided evidence of association with childhood ADHD Significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs2254404 (count: 13) View in gBrowse (chr1:115833581..115856804 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 1)

LD-proxies (count: 12)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014