ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs2242446 dbSNP Ensembl
Location chr16:55690425(Fwd)
Variant Alleles C/T
Ancestral Allele C
Functional Annotation 5_prime_UTR_variant; intron_variant; upstream_gene_variant.
Consequence to Transcript 5_prime_UTR_variant(ENST00000379906)
intron_variant(ENST00000414754; ENST00000568529; ENST00000568655; ENST00000568943)
upstream_gene_variant(ENST00000219833; ENST00000561820; ENST00000566163)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Sengupta, S. M., 2012 T/C P-value=0.34, Z statistic (allele 1)=0.95 P-value=0.34, Z statistic (allele 1)=0.95 No significant association was found in this study. No significant association was found in this study. Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)

SNPs in LD with rs2242446 (count: 5) View in gBrowse (chr16:55690425..55703048 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 5)