ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs2122643 dbSNP Ensembl
Location chr4:62654938(Fwd)
Variant Alleles T/A
Ancestral Allele A
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000504896; ENST00000506700; ENST00000506720; ENST00000506746; ENST00000507164; ENST00000507625; ENST00000508693; ENST00000508946; ENST00000509896; ENST00000511324; ENST00000512091; ENST00000514157; ENST00000514591; ENST00000514996; ENST00000545650; ENST00000570545; ENST00000571630; ENST00000572079; ENST00000572342; ENST00000573720; ENST00000573738; ENST00000573960; ENST00000574812; ENST00000574839; ENST00000574919; ENST00000576028; ENST00000576325; ENST00000576469; ENST00000577151)
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Ribases M, 2011 allelic P-value=0.032, OR=1.31 for all ADHD, allelic P-value...... allelic P-value=0.032, OR=1.31 for all ADHD, allelic P-value=0.034, OR=1.32 for combined ADHD; genotypic P-value=0.018, OR=1.45 for all ADHD, genotypic P-value=0.53 for combined ADHD More... nominal association with ADHD and associated with combined A...... nominal association with ADHD and associated with combined ADHD, but cannot survive the correction for multiple testing More... Significant

SNP related genes (count: 0)

SNPs in LD with rs2122643 (count: 15) View in gBrowse (chr4:62637158..62688669 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 15)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014