ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs2107654 dbSNP Ensembl
Location chr17:63633073(Fwd)
Variant Alleles T/C
Ancestral Allele T
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000585168)
downstream_gene_variant(ENST00000582795)
intron_variant(ENST00000317442; ENST00000392769; ENST00000535342; ENST00000537949; ENST00000541355; ENST00000577662; ENST00000580694; ENST00000581734; ENST00000581739; ENST00000583466)
nc_transcript_variant(ENST00000580694; ENST00000583466)
NMD_transcript_variant(ENST00000577662; ENST00000581734)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Mick E, 2010 T TDT P-value=1.52E-05 (OR=0.72) TDT P-value=1.52E-05 (OR=0.72) One of the top 20 associations from genome-wide association ...... One of the top 20 associations from genome-wide association results More... Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs2107654 (count: 15) View in gBrowse (chr17:63629238..63646603 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 15)