ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs2107281 dbSNP Ensembl
Location	Chr7:8636552(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000405863; ENST00000438764; ENST00000429542)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (b)	T:C		GLM P-value=1.19E-05, meta-analysis P-value=0.05902 GLM P-value=1.19E-05, meta-analysis P-value=0.05902	One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
NXPH1	neurexophilin 1	7p22	1(0/1/0)

Genes from other sources (count: 0)

SNPs in LD with rs2107281 (count: 31) View in gBrowse (chr7:8485887..8636552 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 31)

rs_ID	Functional Annotation	r²[population]
rs7455385	intron_variant	1.0[CHB]; 1.0[JPT]; 0.909[YRI]
rs10238726	intron_variant	0.947[CHB]; 0.966[CHD]; 0.937[JPT]
rs6975588	intron_variant	0.846[CHB]; 0.937[JPT]
rs6970999	intron_variant	1.0[CHB]; 0.933[CHD]; 0.937[JPT]
rs4311585	intron_variant	1.0[CHB]; 1.0[JPT]
rs6463824	intron_variant	0.896[CHB]; 1.0[JPT]
rs10243253	intron_variant	0.94[CHB]; 0.933[JPT]
rs10226547	intron_variant	1.0[CHB]; 0.881[JPT]
rs10282272	intron_variant	1.0[MEX]
rs2158325	intron_variant	1.0[CHB]; 1.0[JPT]; 0.914[YRI]
rs6463825	intron_variant	0.896[CHB]; 1.0[CHD]; 1.0[JPT]
rs4538793	intron_variant	1.0[CHB]; 1.0[CHD]; 0.871[GIH]; 1.0[JPT]; 0.89[MKK]; 0.875[YRI]
rs2214515	intron_variant	0.944[CHB]; 0.965[CHD]; 0.929[JPT]
rs756465	intron_variant	0.947[CHB]; 0.881[JPT]
rs6463823	intron_variant	0.89[CHB]; 0.937[JPT]
rs4470929	intron_variant	1.0[CHB]; 1.0[JPT]; 0.838[YRI]
rs7800185	intron_variant	0.947[CHB]; 0.966[CHD]; 0.881[JPT]
rs2189465	intron_variant	1.0[CHB]; 0.937[JPT]
rs2189462	intron_variant	0.944[CHB]; 1.0[JPT]
rs4595032	intron_variant	1.0[CHB]; 0.966[CHD]; 0.816[GIH]; 1.0[JPT]; 0.916[MKK]; 0.838[YRI]
rs7787487	intron_variant	0.947[CHB]; 0.966[CHD]; 0.881[JPT]
rs10230697	intron_variant	1.0[CHB]; 0.966[CHD]; 0.881[JPT]
rs2349480	intron_variant	1.0[MEX]
rs4538792	intron_variant	1.0[CHB]; 1.0[JPT]; 0.867[YRI]
rs10246412	intron_variant	1.0[MEX]
rs970032	intron_variant	0.947[CHB]; 0.937[JPT]
rs7796918	intron_variant	1.0[MEX]
rs10248829	intron_variant	1.0[CHB]; 0.933[JPT]
rs10258143	intron_variant	1.0[CHB]; 0.881[JPT]
rs17148821	intron_variant	1.0[MEX]
rs10277203	intron_variant	1.0[MEX]