ADHDgene Database

SNP Report

Basic Info

Name	rs187714 dbSNP Ensembl
Location	Chr16:55706499(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	downstream_gene_variant; intron_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000568655) intron_variant(ENST00000567238; ENST00000568529; ENST00000219833; ENST00000568943; ENST00000561820; ENST00000379906; ENST00000566163; ENST00000414754)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Sengupta, S. M., 2012	T/C		P-value=0.12, Z statistic (allele 1)=¨C1.55 P-value=0.12, Z statistic (allele 1)=¨C1.55	No significant association was found in this study. No significant association was found in this study.	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC6A2	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	16q12.2	16(10/5/1)

SNPs in LD with rs187714 (count: 6) View in gBrowse (chr16:55692212..55706499 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs41154	intron_variant; upstream_gene_variant	1(0/1/0)	0.849[ASW]; 1.0[CEU]; 0.955[CHB]; 1.0[CHD]; 0.955[GIH]; 0.951[JPT]; 1.0[LWK]; 0.957[MEX]; 0.961[MKK]; 0.912[TSI]; 1.0[YRI]
rs36024	downstream_gene_variant; intron_variant	3(0/3/0)	1.0[CHB]; 0.977[CHD]; 1.0[JPT]

rs_ID	Functional Annotation	r²[population]
rs933555	intron_variant; upstream_gene_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 0.977[CHD]; 0.956[GIH]; 1.0[JPT]; 1.0[LWK]; 0.957[MEX]; 0.98[MKK]; 0.912[TSI]; 1.0[YRI]
rs36027	intron_variant; upstream_gene_variant	1.0[ASW]; 0.957[CEU]; 0.86[CHB]; 0.977[CHD]; 0.955[GIH]; 0.948[JPT]; 0.966[LWK]; 0.868[MEX]; 0.98[MKK]; 0.89[TSI]; 1.0[YRI]
rs36029	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs8052022	intron_variant	0.896[YRI]