ADHDgene Database

SNP Report

Basic Info

Name	rs1862574 dbSNP Ensembl
Location	Chr5:37830577(Fwd)
Variant Alleles	A/C
Ancestral Allele	C
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000381826; ENST00000326524; ENST00000502572; ENST00000427982; ENST00000515058; ENST00000510177; ENST00000344622)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Syed Z, 2007	A/C	C		Not significant Not significant	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
GDNF	glial cell derived neurotrophic factor	5p13.1-p12	2(1/1/0)

SNPs in LD with rs1862574 (count: 11) View in gBrowse (chr5:37788642..37832833 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2216711	intron_variant	1(0/1/0)	0.883[CEU]; 1.0[CHB]; 0.829[JPT]
rs3749692	3_prime_UTR_variant; downstream_gene_variant	1(0/1/0)	0.804[CHB]