ADHDgene Database

SNP Report

Basic Info

Name	rs1541815 dbSNP Ensembl
Location	Chr5:36702290(Fwd)
Variant Alleles	A/G
Ancestral Allele	G
Functional Annotation	downstream_gene_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000508745; ENST00000512329) intron_variant(ENST00000510740) nc_transcript_variant(ENST00000510740)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Turic D, 2005(a)	A/G		no P-value no P-value	no association no association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC1A3	solute carrier family 1 (glial high affinity glutamate transporter), member 3	5p13	2(1/1/0)

SNPs in LD with rs1541815 (count: 4) View in gBrowse (chr5:36699435..36709701 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs7716616	intron_variant; nc_transcript_variant	0.951[CEU]; 1.0[CHB]; 0.937[CHD]; 0.976[GIH]; 0.933[JPT]; 0.865[MKK]; 1.0[TSI]
rs1019770	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[ASW]; 0.951[CEU]; 1.0[CHB]; 0.937[CHD]; 1.0[GIH]; 0.933[JPT]; 0.847[LWK]; 0.875[MKK]; 1.0[TSI]; 0.892[YRI]
rs1566444	intron_variant; nc_transcript_variant	0.888[CEU]
rs2033225	downstream_gene_variant; intron_variant; nc_transcript_variant	0.951[CEU]; 1.0[CHB]; 0.933[JPT]; 0.892[YRI]