ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs1541665 dbSNP Ensembl
Location chr5:170142917(Fwd)
Variant Alleles C/T
Ancestral Allele C
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000328939; ENST00000377360; ENST00000390656; ENST00000411494; ENST00000434108; ENST00000520740)
No. of Studies 2 (significant: 0; non-significant: 2; trend: 0)
Source Literature-origin

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Neale BM, 2008 T:C Corrected TDT P-value=5.60E-05 (OR=0.6338) Corrected TDT P-value=5.60E-05 (OR=0.6338) One of top 25 results in corrected TDT test One of top 25 results in corrected TDT test Non-significant
Lantieri F, 2010 T:C Binomial P-value=0.29, OR=0.92 for whole sample; Binomial P-...... Binomial P-value=0.29, OR=0.92 for whole sample; Binomial P-value=0.7, OR=1.08 for C-subtype More... no significant association no significant association Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 0)

Genes from other sources Help (count: 1)


SNPs in LD with rs1541665 (count: 43) View in gBrowse (chr5:170121808..170168804 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 43)