SNP Report

Basic Info
Name |
rs1503433
dbSNP
Ensembl
|
Location |
Chr3:88037200(Fwd) |
Variant Alleles |
C/A |
Ancestral Allele |
A |
Functional Annotation |
upstream_gene_variant.
|
Consequence to Transcript |
upstream_gene_variant(ENST00000319595) |
No. of Studies |
1 (significant: 1; non-significant: 0; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 28)

rs_ID |
Functional Annotation |
r2[population] |
rs6770013
|
|
1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.85[LWK]; 1.0[MEX]; 0.8[MKK]; 1.0[TSI]; 0.93[YRI]
|
rs4858975
|
|
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs12714696
|
|
1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
|
rs9880480
|
|
1.0[CEU]
|
rs2016224
|
3_prime_UTR_variant |
1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 1.0[TSI]
|
rs17549345
|
|
1.0[CEU]; 0.801[MEX]; 0.884[TSI]
|
rs9859034
|
|
1.0[CEU]
|
rs10511136
|
|
1.0[CEU]
|
rs1946569
|
|
1.0[CHB]; 1.0[JPT]
|
rs1835543
|
|
1.0[CEU]; 1.0[CHB]; 0.888[JPT]
|
rs2344185
|
|
1.0[CEU]; 0.805[CHD]; 0.902[MEX]; 0.884[TSI]
|
rs9863076
|
|
0.877[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.869[LWK]; 1.0[MEX]; 0.834[MKK]; 1.0[TSI]; 1.0[YRI]
|
rs7630716
|
|
1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.85[LWK]; 1.0[MEX]; 0.8[MKK]; 1.0[TSI]; 0.93[YRI]
|
rs1469569
|
|
1.0[CEU]; 0.805[CHD]; 0.95[JPT]; 0.902[MEX]; 0.884[TSI]
|
rs17025214
|
|
1.0[JPT]
|
rs9852704
|
|
1.0[CEU]; 0.805[CHD]; 0.902[MEX]; 0.884[TSI]
|
rs9310061
|
|
1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.948[MEX]; 1.0[TSI]
|
rs9842748
|
|
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs7652406
|
|
1.0[CEU]; 1.0[CHB]; 0.95[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 1.0[TSI]
|
rs11915058
|
|
1.0[CEU]
|
rs6785333
|
|
0.96[CEU]; 0.802[CHD]; 0.902[MEX]; 0.884[TSI]
|
rs13074576
|
|
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs11717413
|
|
1.0[CEU]
|
rs1431153
|
|
1.0[CEU]; 1.0[CHB]; 0.894[JPT]
|
rs2099229
|
|
1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.829[LWK]; 1.0[MEX]; 0.977[TSI]; 0.93[YRI]
|
rs6781901
|
|
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs17025241
|
|
0.813[CEU]; 1.0[JPT]
|
rs7629565
|
downstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 1.0[TSI]
|