ADHDgene Database

SNP Report

Basic Info

Name	rs1476278 dbSNP Ensembl
Location	Chr17:37836243(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000577337; ENST00000584620) downstream_gene_variant(ENST00000584856) intron_variant(ENST00000429199; ENST00000582276; ENST00000309862; ENST00000580898; ENST00000300658; ENST00000577337; ENST00000579146; ENST00000584620; ENST00000378011) nc_transcript_variant(ENST00000309862; ENST00000580898; ENST00000582276)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location
PGAP3	post-GPI attachment to proteins 3	17q21.2

SNPs in LD with rs1476278 (count: 5) View in gBrowse (chr17:37781849..37836243 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs879606	downstream_gene_variant; upstream_gene_variant	1(0/1/0)	0.822[JPT]
rs907094	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.822[JPT]
rs1053651	downstream_gene_variant; synonymous_variant; upstream_gene_variant	1(0/1/0)	0.864[CHB]; 0.827[CHD]; 0.824[GIH]; 0.905[JPT]; 0.844[TSI]
rs3764352	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.822[JPT]
rs2952151	3_prime_UTR_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant	1(0/1/0)	0.906[CEU]; 0.954[CHB]; 0.95[CHD]; 1.0[JPT]; 0.877[MEX]