SNP Report

Basic Info
Name |
rs1352250
dbSNP
Ensembl
|
Location |
chr12:72397784(Fwd) |
Variant Alleles |
A/G |
Ancestral Allele |
G |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000333850) |
No. of Studies |
2 (significant: 1; non-significant: 1; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 2)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 35)

rs_ID |
Functional Annotation |
r2[population] |
rs1532008
|
intron_variant |
0.837[CHB]; 0.826[JPT]; 0.931[YRI]
|
rs10879351
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 0.953[JPT]; 1.0[YRI]
|
rs11179049
|
intron_variant |
0.8[CHB]
|
rs1352251
|
intron_variant |
0.871[JPT]; 0.931[YRI]
|
rs2368049
|
intron_variant |
0.829[CHB]; 0.927[YRI]
|
rs11834114
|
intron_variant |
0.817[JPT]
|
rs11834097
|
intron_variant |
0.826[JPT]
|
rs11179039
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs7979770
|
intron_variant |
0.844[CEU]; 0.837[CHB]; 0.826[JPT]; 0.93[YRI]
|
rs4760754
|
intron_variant |
0.919[CEU]; 0.817[JPT]; 0.849[YRI]
|
rs4760750
|
intron_variant |
0.853[JPT]
|
rs7969114
|
intron_variant |
0.831[CEU]; 0.857[JPT]
|
rs12322900
|
intron_variant; nc_transcript_variant |
0.844[CEU]; 0.862[YRI]
|
rs10879346
|
intron_variant; nc_transcript_variant |
0.847[CEU]; 0.859[YRI]
|
rs7967686
|
intron_variant |
0.827[CEU]; 0.8[CHB]; 0.927[YRI]
|
rs9325202
|
intron_variant |
0.88[CEU]; 0.859[YRI]
|
rs12319219
|
intron_variant |
0.91[JPT]
|
rs11179033
|
intron_variant |
0.817[JPT]
|
rs7963720
|
intron_variant |
0.919[CEU]; 0.86[JPT]; 0.816[YRI]
|
rs10879345
|
intron_variant; nc_transcript_variant |
0.919[CEU]
|
rs10879350
|
intron_variant |
0.817[JPT]
|
rs2171363
|
downstream_gene_variant; intron_variant |
0.919[CEU]
|
rs12229394
|
intron_variant |
0.817[JPT]
|
rs4760817
|
intron_variant |
0.919[CEU]; 0.86[JPT]; 0.849[YRI]
|
rs4641528
|
intron_variant |
0.919[CEU]; 0.817[JPT]; 0.849[YRI]
|
rs6582073
|
intron_variant |
0.919[CEU]; 0.86[JPT]
|
rs10748190
|
intron_variant |
0.882[CEU]; 0.87[YRI]
|
rs4760755
|
intron_variant |
0.919[CEU]; 0.817[JPT]; 0.849[YRI]
|
rs3903502
|
intron_variant |
0.88[CEU]
|
rs7309686
|
intron_variant |
0.837[CEU]; 0.845[JPT]
|
rs6582077
|
intron_variant |
0.917[CEU]; 0.817[JPT]
|
rs11179023
|
intron_variant |
0.816[JPT]
|
rs1843811
|
intron_variant |
0.807[CEU]; 0.867[JPT]
|
rs4760816
|
intron_variant |
0.919[CEU]; 0.86[JPT]
|
rs11179050
|
intron_variant |
0.826[CHB]
|