ADHDgene Database

SNP Report

Basic Info

Name	rs13238831 dbSNP Ensembl
Location	Chr7:128516470(Fwd)
Variant Alleles	T/C
Ancestral Allele	C
Functional Annotation	downstream_gene_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000476647; ENST00000441244) intron_variant(ENST00000492679; ENST00000460528; ENST00000297801) nc_transcript_variant(ENST00000460528; ENST00000492679; ENST00000297801)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (b)	T:C		GLM P-value=5.57E-06, meta-analysis P-value=0.0005903 GLM P-value=5.57E-06, meta-analysis P-value=0.0005903	One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location
KCP	kielin/chordin-like protein	7q32.3

SNPs in LD with rs13238831 (count: 2) View in gBrowse (chr7:128511024..128516945 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs6970221	downstream_gene_variant; intron_variant; nc_transcript_variant	0.809[CEU]; 0.821[CHB]; 0.91[CHD]
rs1532222	intron_variant; nc_transcript_variant; non_coding_exon_variant	0.911[CHB]; 0.977[CHD]; 1.0[JPT]