ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs13238831 dbSNP Ensembl
Location chr7:128516470(Fwd)
Variant Alleles T/C
Ancestral Allele T
Functional Annotation downstream_gene_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000441244; ENST00000476647; ENST00000609480)
intron_variant(ENST00000297801; ENST00000460528; ENST00000492679)
nc_transcript_variant(ENST00000297801; ENST00000460528; ENST00000492679)
No. of Studies 1 (significant: 0; non-significant: 0; trend: 1)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Neale BM, 2010 (b) T:C GLM P-value=5.57E-06, meta-analysis P-value=0.0005903 GLM P-value=5.57E-06, meta-analysis P-value=0.0005903 One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset Trend

SNP related genes (count: 1)

Literature-origin genes (count: 0)

Genes from other sources Help (count: 1)

SNPs in LD with rs13238831 (count: 2) View in gBrowse (chr7:128511024..128516945 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)