ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs12920919 dbSNP Ensembl
Location	Chr16:9937980(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000396573; ENST00000562109; ENST00000330684; ENST00000396575; ENST00000535259; ENST00000404927)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Nyman ES, 2007			No available information. No available information.	No evidence of association was seen. No evidence of association was seen.	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
GRIN2A	glutamate receptor, ionotropic, N-methyl D-aspartate 2A	16p13.2	3(1/2/0)

Genes from other sources (count: 0)

SNPs in LD with rs12920919 (count: 34) View in gBrowse (chr16:9883537..9971429 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 2)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs727605	intron_variant; nc_transcript_variant	1(0/1/0)	1.0[CHB]; 1.0[CHD]; 0.882[GIH]; 0.888[JPT]; 0.932[MEX]
rs8049651	downstream_gene_variant; synonymous_variant	1(0/1/0)	0.884[GIH]; 1.0[MEX]

LD-proxies (count: 32)

rs_ID	Functional Annotation	r²[population]
rs7204266	intron_variant; nc_transcript_variant	0.927[CHD]; 1.0[JPT]
rs9674103	intron_variant	0.853[MEX]
rs7199375	intron_variant; nc_transcript_variant	0.846[CHB]; 0.888[JPT]
rs9934477	downstream_gene_variant; intron_variant	0.865[CEU]; 1.0[CHB]; 1.0[JPT]
rs2267792	intron_variant	0.853[MEX]
rs7196708	intron_variant	0.86[MEX]
rs7204928	intron_variant; nc_transcript_variant	0.864[CHB]; 1.0[CHD]; 1.0[JPT]
rs9928908	intron_variant; nc_transcript_variant	1.0[JPT]
rs9938117	intron_variant	0.825[GIH]; 0.928[MEX]
rs8050843	intron_variant	0.932[MEX]
rs7201930	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.882[GIH]; 1.0[JPT]; 0.871[MEX]
rs7189901	intron_variant; nc_transcript_variant	0.817[CEU]; 1.0[CHB]; 1.0[JPT]
rs6497523	intron_variant	0.865[MEX]
rs9302396	intron_variant; nc_transcript_variant	0.864[CHB]; 1.0[JPT]
rs9933832	intron_variant; nc_transcript_variant	0.836[CEU]; 1.0[CHB]; 1.0[CHD]; 0.912[GIH]; 1.0[JPT]; 0.871[MEX]; 0.897[TSI]
rs16951624	intron_variant; nc_transcript_variant	1.0[JPT]
rs11642764	intron_variant	0.825[GIH]; 0.86[MEX]
rs6497540	intron_variant	0.855[GIH]
rs11647877	intron_variant	0.929[MEX]
rs917834	intron_variant; nc_transcript_variant	0.864[CHB]; 1.0[JPT]
rs9302397	intron_variant; nc_transcript_variant	0.864[CHB]; 1.0[CHD]; 1.0[JPT]
rs9932138	intron_variant	0.871[MEX]
rs8058295	intron_variant	0.86[MEX]
rs9926303	downstream_gene_variant; intron_variant	1.0[CHB]; 1.0[JPT]
rs2267795	intron_variant; nc_transcript_variant	1.0[JPT]
rs2267787	intron_variant	0.86[MEX]
rs9922678	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs16966529	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs2215718	downstream_gene_variant; intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.932[MEX]; 0.949[TSI]
rs7196023	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs8063193	intron_variant; nc_transcript_variant	0.836[CEU]; 1.0[CHB]; 0.911[GIH]; 1.0[JPT]; 0.843[TSI]
rs5003769	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]