ADHDgene Database

SNP Report

Basic Info

Name	rs12556704 dbSNP Ensembl
Location	ChrX:6995732(Fwd)
Variant Alleles	C/A
Ancestral Allele	C
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000486446; ENST00000424830; ENST00000412827; ENST00000540122; ENST00000381077)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location
HDHD1	haloacid dehalogenase-like hydrolase domain containing 1	Xp22.32

SNPs in LD with rs12556704 (count: 4) View in gBrowse (chrX:6995732..7172508 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs1000900	intron_variant	1(0/1/0)	0.88[CEU]; 0.935[CHB]; 0.959[CHD]; 0.802[GIH]; 0.928[JPT]; 1.0[MEX]; 1.0[TSI]
rs7058445	intron_variant	2(0/2/0)	1.0[ASW]; 0.88[CEU]; 0.935[CHB]; 1.0[CHD]; 0.802[GIH]; 0.928[JPT]; 0.868[LWK]; 0.942[MEX]; 0.977[MKK]; 1.0[TSI]; 0.904[YRI]
rs2024159	intron_variant	1(0/1/0)	1.0[ASW]; 0.88[CEU]; 0.935[CHB]; 1.0[CHD]; 0.83[GIH]; 0.928[JPT]; 0.867[LWK]; 1.0[MEX]; 0.976[MKK]; 1.0[TSI]; 0.904[YRI]
rs11095437	intron_variant	1(0/1/0)	0.873[CEU]; 0.802[GIH]; 1.0[MEX]; 0.899[TSI]