ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs11954894 dbSNP Ensembl
Location chr5:50674131(Fwd)
Variant Alleles C/A/T
Ancestral Allele C
Functional Annotation downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000558403)
nc_transcript_variant(ENST00000559112; ENST00000601500)
non_coding_exon_variant(ENST00000559112; ENST00000601500)
upstream_gene_variant(ENST00000230658)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Laurin N, 2008(a) C/T P-value=0.079 in the catergorical analysis, P-value>0.05 in ...... P-value=0.079 in the catergorical analysis, P-value>0.05 in the quantitative analysis More... no significant evidence of association no significant evidence of association Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs11954894 (count: 40) View in gBrowse (chr5:50583089..50791584 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 40)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014