ADHDgene Database

SNP Report

Basic Info

Name	rs10895454 dbSNP Ensembl
Location	Chr11:103399692(Fwd)
Variant Alleles	C/A
Ancestral Allele	C
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (b)	A:C		GLM P-value=3.61E-05, meta-analysis P-value=0.1831 GLM P-value=3.61E-05, meta-analysis P-value=0.1831	One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset	Non-significant

SNP related genes (count: 0)

SNPs in LD with rs10895454 (count: 9) View in gBrowse (chr11:103340325..103403911 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	#studies(significant/non-significant/trend)	r²[population]

rs1481964	1(0/1/0)	1.0[CEU]; 1.0[CHB]; 0.966[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 0.912[MKK]; 1.0[TSI]
rs1481961	1(0/1/0)	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 0.932[CHD]; 1.0[GIH]; 1.0[JPT]; 0.878[LWK]; 1.0[MEX]; 0.946[MKK]; 1.0[TSI]; 1.0[YRI]
rs7117196	1(0/1/0)	0.813[CHD]; 0.841[JPT]; 0.838[MEX]; 0.878[MKK]; 0.924[YRI]

rs_ID	Functional Annotation	r²[population]
rs11225817	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.8[CHD]
rs1600820		0.904[CHB]; 1.0[JPT]; 0.913[YRI]
rs1481952		0.961[CEU]; 0.834[CHD]; 0.882[JPT]; 0.88[MEX]; 0.977[TSI]
rs17379584		1.0[CEU]; 0.943[JPT]; 1.0[YRI]
rs10895438		0.961[CEU]; 0.834[CHD]; 0.882[JPT]; 0.88[MEX]; 0.977[TSI]
rs1481960		1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]