ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs10895437 dbSNP Ensembl
Location	Chr11:103358091(Fwd)
Variant Alleles	A/G
Ancestral Allele	G
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (b)	A:G		GLM P-value=2.22E-05, meta-analysis P-value=0.712 GLM P-value=2.22E-05, meta-analysis P-value=0.712	One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset	Non-significant

SNP related genes (count: 0)

SNPs in LD with rs10895437 (count: 63) View in gBrowse (chr11:103190128..103405082 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 2)

rs_ID	#studies(significant/non-significant/trend)	r²[population]

rs7105630	1(0/1/0)	1.0[CEU]; 0.804[CHD]; 0.804[GIH]; 0.879[JPT]; 0.91[MEX]; 1.0[TSI]
rs1481963	1(0/1/0)	1.0[CEU]; 0.804[GIH]; 0.879[JPT]; 0.909[MEX]; 1.0[TSI]

LD-proxies (count: 61)

rs_ID	Functional Annotation	r²[population]
rs12221807		0.879[JPT]
rs11225860		0.879[JPT]
rs2671398	NMD_transcript_variant; intron_variant	1.0[CEU]
rs2671380	NMD_transcript_variant; intron_variant	1.0[CEU]
rs2256359	NMD_transcript_variant; intron_variant; upstream_gene_variant	0.918[CEU]
rs2671338	NMD_transcript_variant; intron_variant; upstream_gene_variant	0.908[CEU]
rs7104412		0.8[CHD]; 0.812[JPT]
rs2566913	3_prime_UTR_variant; NMD_transcript_variant; intron_variant; synonymous_variant	0.918[CEU]
rs7950495	NMD_transcript_variant; intron_variant; upstream_gene_variant	1.0[CEU]
rs7949331	NMD_transcript_variant; intron_variant	1.0[CEU]; 0.856[GIH]
rs11828719	NMD_transcript_variant; intron_variant	0.88[CEU]; 0.853[GIH]
rs1709151	NMD_transcript_variant; intron_variant; upstream_gene_variant	1.0[CEU]
rs10895451		1.0[CEU]; 0.879[JPT]
rs313877	NMD_transcript_variant; intron_variant; upstream_gene_variant	0.885[CHB]; 0.879[JPT]
rs2671349	NMD_transcript_variant; intron_variant	1.0[CEU]; 0.856[GIH]
rs3847580	NMD_transcript_variant; intron_variant	0.81[CEU]
rs11225769	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	1.0[CEU]
rs2671391	NMD_transcript_variant; intron_variant	1.0[CEU]; 0.856[GIH]
rs2256846	NMD_transcript_variant; intron_variant; upstream_gene_variant	0.918[CEU]
rs6591031		1.0[CHB]; 0.864[CHD]; 0.939[JPT]
rs11225861		1.0[CEU]; 0.875[JPT]
rs7946023		1.0[CHB]; 0.89[CHD]; 0.939[JPT]
rs2175888	NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]
rs7117297		1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs7128256		1.0[CHB]; 0.939[JPT]
rs2671333	NMD_transcript_variant; intron_variant	0.918[CEU]
rs2671346	NMD_transcript_variant; intron_variant	0.905[CEU]
rs1709163	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	1.0[CEU]
rs2671390	NMD_transcript_variant; intron_variant	1.0[CEU]
rs313426	NMD_transcript_variant; intron_variant	0.918[CEU]; 0.834[GIH]
rs4316477		0.865[JPT]
rs1709149	NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]
rs10895436	downstream_gene_variant	0.937[CHB]; 0.878[JPT]
rs2671397	NMD_transcript_variant; intron_variant	1.0[CEU]; 0.856[GIH]
rs2512137	NMD_transcript_variant; intron_variant	1.0[CEU]
rs10895414	NMD_transcript_variant; intron_variant	1.0[CEU]
rs11225792	NMD_transcript_variant; intron_variant	1.0[CEU]
rs2671331	NMD_transcript_variant; intron_variant	0.918[CEU]
rs11225794	NMD_transcript_variant; intron_variant	1.0[CEU]; 0.856[GIH]
rs2671385	NMD_transcript_variant; intron_variant	1.0[CEU]; 0.856[GIH]
rs2566944	NMD_transcript_variant; intron_variant	1.0[CEU]
rs2671393	NMD_transcript_variant; intron_variant	1.0[CEU]; 0.856[GIH]
rs2671332	NMD_transcript_variant; intron_variant	0.918[CEU]
rs10895406	NMD_transcript_variant; intron_variant	0.957[CEU]
rs2671336	NMD_transcript_variant; intron_variant; upstream_gene_variant	0.918[CEU]
rs1600819		1.0[CEU]; 0.857[JPT]
rs2671343	NMD_transcript_variant; intron_variant	0.918[CEU]
rs2512129	NMD_transcript_variant; intron_variant	1.0[CEU]
rs1007349		0.879[JPT]
rs12289501		0.879[JPT]
rs1543114	NMD_transcript_variant; intron_variant	1.0[CEU]; 0.854[GIH]
rs11225774	NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant	0.915[CEU]
rs2671345	NMD_transcript_variant; intron_variant	0.948[CEU]
rs507468	NMD_transcript_variant; intron_variant	0.875[CHB]; 0.879[JPT]
rs542937	NMD_transcript_variant; intron_variant	0.885[CHB]; 0.879[JPT]
rs2514408	NMD_transcript_variant; intron_variant	0.918[CEU]
rs3018519	NMD_transcript_variant; intron_variant	1.0[CEU]
rs313377	NMD_transcript_variant; intron_variant	0.956[CEU]; 0.812[GIH]
rs7942960	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	1.0[CEU]
rs10895413	NMD_transcript_variant; intron_variant	1.0[CEU]
rs2566918	NMD_transcript_variant; intron_variant; upstream_gene_variant	1.0[CEU]