ADHDgene Database

SNP Report

Basic Info

Name	rs1069061 dbSNP Ensembl
Location	Chr5:112218982(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000506997; ENST00000511865) downstream_gene_variant(ENST00000474542; ENST00000504247) intron_variant(ENST00000513339; ENST00000503445; ENST00000511865; ENST00000497856; ENST00000379638; ENST00000261482; ENST00000506997; ENST00000509024; ENST00000512790; ENST00000545426) nc_transcript_variant(ENST00000497856; ENST00000503445; ENST00000509024; ENST00000512790) upstream_gene_variant(ENST00000436573)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
REEP5	receptor accessory protein 5	5q22-q23	1(0/0/1)

Approved Symbol	Approved Name	Location
XBP1P1	X-box binding protein 1 pseudogene 1	5q22.2
SRP19	signal recognition particle 19kDa	5q21-q22

SNPs in LD with rs1069061 (count: 1) View in gBrowse (chr5:112218982..112242968 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs469727	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/0/1)	0.844[CEU]; 1.0[GIH]; 0.932[MEX]; 0.838[TSI]