ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs10513219 dbSNP Ensembl
Location Chr3:143534874(Fwd)
Variant Alleles G/A
Ancestral Allele A
Functional Annotation NMD_transcript_variant; intron_variant.
Consequence to Transcript NMD_transcript_variant(ENST00000474727)
intron_variant(ENST00000316549; ENST00000474727; ENST00000474151)
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Brookes K, 2006 A/G UNPHASED TDT P-value=0.0423; WHAP TDT P-value=0.028 UNPHASED TDT P-value=0.0423; WHAP TDT P-value=0.028 significant association was observed in both UNPHASED and WH...... significant association was observed in both UNPHASED and WHAP analyses More... Significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs10513219 (count: 12) View in gBrowse (chr3:143534874..143544418 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 12)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014