ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Gene Report

Basic Info

Approved Symbol	LECT1
Previous Symbol	MYETS1
Symbol Alias	CHM-I, CHM1, chondromodulin
Approved Name	leukocyte cell derived chemotaxin 1
Previous Name	multiple myeloma tumor suppressor 1
Location	13q14.3
Position	chr13:53277399-53313947, -
External Links	HGNC: 17005 Entrez Gene: 11061 Ensembl: ENSG00000136110 UCSC: uc001vhf.2
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin; Mapped by LD-proxy; Mapped by literature SNP

Gene related studies (count: 1)

Reference	Statistical Values/Author Comments	Result of Statistical Analysis
Mick E, 2010	No significant or Trend associated SNP was mapped in this gene.	Non-significant

Gene related SNPs (count: 34)

Literature-origin SNPs (count: 1)

rs_ID	Location	Functional Annotation	No. of Studies (significant/non-significant/trend)
rs6561686	Chr13:53289094(Fwd)	intron_variant	1(0/1/0)

LD-proxies (count: 33)

rs_ID	Location	Functional Annotation
rs9526991	Chr13:53299622(Fwd)	intron_variant
rs7338913	Chr13:53283062(Fwd)	downstream_gene_variant; intron_variant
rs4884249	Chr13:53296671(Fwd)	intron_variant
rs4551925	Chr13:53273634(Fwd)	downstream_gene_variant
rs893069	Chr13:53274683(Fwd)	downstream_gene_variant
rs7992760	Chr13:53278104(Fwd)	intron_variant
rs4242994	Chr13:53280938(Fwd)	intron_variant
rs6420307	Chr13:53289394(Fwd)	intron_variant
rs4338683	Chr13:53297753(Fwd)	intron_variant
rs4586310	Chr13:53273405(Fwd)	downstream_gene_variant
rs4261419	Chr13:53273591(Fwd)	downstream_gene_variant
rs7994651	Chr13:53272906(Fwd)	downstream_gene_variant
rs893070	Chr13:53274627(Fwd)	downstream_gene_variant
rs1436724	Chr13:53278680(Fwd)	intron_variant
rs4278636	Chr13:53273480(Fwd)	downstream_gene_variant
rs4261418	Chr13:53273570(Fwd)	downstream_gene_variant
rs9536245	Chr13:53278894(Fwd)	intron_variant
rs9536246	Chr13:53279418(Fwd)	intron_variant
rs9568752	Chr13:53275284(Fwd)	downstream_gene_variant
rs9536244	Chr13:53277646(Fwd)	3_prime_UTR_variant
rs9526986	Chr13:53280108(Fwd)	intron_variant
rs9536249	Chr13:53281413(Fwd)	intron_variant
rs9536248	Chr13:53279570(Fwd)	intron_variant
rs3931491	Chr13:53279733(Fwd)	intron_variant
rs9536257	Chr13:53297911(Fwd)	intron_variant
rs9536250	Chr13:53285093(Fwd)	downstream_gene_variant; intron_variant
rs6561685	Chr13:53283385(Fwd)	downstream_gene_variant; intron_variant
rs3989920	Chr13:53281522(Fwd)	intron_variant
rs9526997	Chr13:53305596(Fwd)	intron_variant
rs9526993	Chr13:53303082(Fwd)	intron_variant
rs9536260	Chr13:53299734(Fwd)	intron_variant
rs9536259	Chr13:53299621(Fwd)	intron_variant
rs4885948	Chr13:53309433(Fwd)	intron_variant

Gene related CNVs (count: 0)

Gene related other variant (count: 0)

Gene related regions (count: 0)

Gene related GO terms (count: 10)

GO terms by PBA (with statistical significance of FDR<0.05) (count: 0)

GO terms by database search (count: 10)

ID	Name	Type	Evidence[PMID]	No. of Genes in ADHDgene
GO:0030948	negative regulation of vascular endothelial growth factor receptor signaling pathway	Biological Process		1
GO:0016525	negative regulation of angiogenesis	Biological Process	IDA[16980969]	5
GO:0016021	integral to membrane	Cellular Component		845
GO:0012505	endomembrane system	Cellular Component		16
GO:0006029	proteoglycan metabolic process	Biological Process	TAS[10103018]	2
GO:0005576	extracellular region	Cellular Component		240
GO:0001937	negative regulation of endothelial cell proliferation	Biological Process		2
GO:0001886	endothelial cell morphogenesis	Biological Process		2
GO:0001501	skeletal system development	Biological Process	TAS[10103018]	16
GO:0051216	cartilage development	Biological Process		11

Gene related KEGG pathways (count: 0)

Genes shared at least 5 GO terms with LECT1 (count: 0)

Genes shared at least 2 KEGG pathways with LECT1 (count: 0)

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Region: chr13:53277399..53313947 View in gBrowse