ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs821616 dbSNP Ensembl
Location chr1:232144598(Fwd)
Variant Alleles A/T
Ancestral Allele A
Functional Annotation 3_prime_UTR_variant; missense_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant.
Polyphen Annotation: possibly damaging(ENST00000439617; ENST00000366637) | unknown(ENST00000535983)
SIFT Annotation: deleterious(ENST00000439617) | tolerated(ENST00000366637)
Consequence to Transcript 3_prime_UTR_variant(ENST00000422590; ENST00000537876)
missense_variant(ENST00000439617; ENST00000366637; ENST00000535983)
nc_transcript_variant(ENST00000427560)
NMD_transcript_variant(ENST00000422590)
non_coding_exon_variant(ENST00000427560)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Jacobsen, K. K.,2013 chi-square tests P-value=0.58 (OR=1.05;95%CI=0.89-1.24) chi-square tests P-value=0.58 (OR=1.05;95%CI=0.89-1.24) This SNP was not significant associated with ADHD This SNP was not significant associated with ADHD Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs821616 (count: 38) View in gBrowse (chr1:232094259..232151908 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 38)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014