ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs760609 dbSNP Ensembl
Location	Chr6:114708100(Fwd)
Variant Alleles	A/C
Ancestral Allele	C
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000518470) nc_transcript_variant(ENST00000518470)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Mick E, 2010		A	TDT P-value=2.51E-05 (OR=1.37) TDT P-value=2.51E-05 (OR=1.37)	One of the top 20 associations from genome-wide association ...... One of the top 20 associations from genome-wide association results More...	Non-significant

SNP related genes (count: 0)

SNPs in LD with rs760609 (count: 23) View in gBrowse (chr6:114612973..114721697 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 23)

rs_ID	Functional Annotation	r²[population]
rs7742475	intron_variant; nc_transcript_variant	0.885[CEU]; 0.911[CHB]; 1.0[JPT]
rs1548225	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs10484273	intron_variant; nc_transcript_variant	0.885[CEU]; 0.824[CHB]; 1.0[JPT]
rs1323056	intron_variant; nc_transcript_variant	0.885[CEU]; 0.911[CHB]; 0.874[CHD]; 0.875[GIH]; 1.0[JPT]; 0.888[TSI]
rs6927808	intron_variant; nc_transcript_variant	0.883[CEU]; 0.911[CHB]; 1.0[JPT]
rs1033394	intron_variant; nc_transcript_variant	1.0[CHB]; 0.874[CHD]; 0.804[GIH]; 1.0[JPT]
rs12216474	intron_variant; nc_transcript_variant	0.885[CEU]; 0.911[CHB]; 1.0[JPT]
rs785132	intron_variant; nc_transcript_variant	0.885[CEU]; 0.911[CHB]; 1.0[JPT]
rs7770227	intron_variant; nc_transcript_variant	0.885[CEU]; 0.911[CHB]; 0.874[CHD]; 1.0[JPT]; 0.821[TSI]
rs785137	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs760608	intron_variant; nc_transcript_variant	1.0[CHB]; 0.803[GIH]; 1.0[JPT]
rs9488369	intron_variant; nc_transcript_variant	0.848[CEU]; 0.911[CHB]; 1.0[JPT]
rs9384900	intron_variant; nc_transcript_variant	1.0[CHB]; 0.874[CHD]; 0.801[GIH]; 1.0[JPT]
rs1337332	intron_variant; nc_transcript_variant	0.961[CEU]; 1.0[CHB]; 1.0[JPT]; 0.858[YRI]
rs7763992	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs10447428	intron_variant; nc_transcript_variant	0.885[CEU]; 0.825[CHB]; 0.874[CHD]; 0.83[GIH]; 0.823[JPT]; 0.821[TSI]
rs7349953	intron_variant; nc_transcript_variant	0.883[CEU]; 0.911[CHB]; 1.0[JPT]
rs785145	intron_variant; nc_transcript_variant	0.924[CEU]; 0.911[CHB]; 1.0[JPT]
rs10484274	intron_variant; nc_transcript_variant	0.885[CEU]; 0.824[CHB]; 1.0[JPT]
rs7739768	intron_variant; nc_transcript_variant	0.885[CEU]; 0.911[CHB]; 1.0[JPT]
rs9400717	intron_variant; nc_transcript_variant	0.958[YRI]
rs10447429	intron_variant; nc_transcript_variant	0.885[CEU]; 0.911[CHB]; 1.0[JPT]
rs2184906	intron_variant; nc_transcript_variant	0.881[ASW]; 0.96[CEU]; 1.0[CHB]; 1.0[CHD]; 0.974[GIH]; 1.0[JPT]; 1.0[MEX]; 1.0[TSI]; 0.858[YRI]