ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs7172689 dbSNP Ensembl
Location Chr15:81533695(Fwd)
Variant Alleles C/T
Ancestral Allele T
Functional Annotation NMD_transcript_variant; intron_variant.
Consequence to Transcript NMD_transcript_variant(ENST00000360547; ENST00000560241)
intron_variant(ENST00000394660; ENST00000360547; ENST00000559383; ENST00000559388; ENST00000560241; ENST00000302987)
No. of Studies 1 (significant: 0; non-significant: 0; trend: 1)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Lasky-Su J, 2008 P-value=3.86E-06 under Additive model for IA symptom count; ...... P-value=3.86E-06 under Additive model for IA symptom count; P-value=1.50E-06 under Dominant model for IA symptom count More... association finding with P-value association finding with P-value Trend

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs7172689 (count: 34) View in gBrowse (chr15:81524488..81612931 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 34)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014