ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs7172689 dbSNP Ensembl
Location	chr15:81533695(Fwd)
Variant Alleles	C/T
Ancestral Allele	T
Functional Annotation	intron_variant; NMD_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000302987; ENST00000360547; ENST00000394660; ENST00000559383; ENST00000559388; ENST00000560241) NMD_transcript_variant(ENST00000360547; ENST00000560241)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Lasky-Su J, 2008			P-value=3.86E-06 under Additive model for IA symptom count; ...... P-value=3.86E-06 under Additive model for IA symptom count; P-value=1.50E-06 under Dominant model for IA symptom count More...	association finding with P-value association finding with P-value	Trend

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
IL16	interleukin 16	15q26.3	1(0/0/1)

Genes from other sources (count: 0)

SNPs in LD with rs7172689 (count: 34) View in gBrowse (chr15:81524488..81612931 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 34)

rs_ID	Functional Annotation	r²[population]
rs4396495	intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	1.0[JPT]
rs11072997	intron_variant; NMD_transcript_variant	0.948[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs7181247	intron_variant; NMD_transcript_variant	0.904[CEU]; 1.0[CHB]; 1.0[JPT]
rs11072995	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs8026245	intron_variant; NMD_transcript_variant	0.901[CEU]; 1.0[CHB]; 1.0[JPT]
rs17875558	3_prime_UTR_variant; downstream_gene_variant; upstream_gene_variant	1.0[JPT]
rs4076201	intron_variant; NMD_transcript_variant	0.901[CEU]; 1.0[CHB]; 1.0[JPT]
rs11632978	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant	1.0[JPT]
rs12324786	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.93[YRI]
rs7175701	intron_variant; NMD_transcript_variant	0.901[CEU]; 1.0[CHB]; 1.0[JPT]
rs11856780	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.933[YRI]
rs11634770	downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; upstream_gene_variant	1.0[JPT]
rs11853619	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.959[YRI]
rs11633024	intron_variant; NMD_transcript_variant	0.901[CEU]; 1.0[CHB]
rs6495554	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.902[YRI]
rs7180245	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.963[YRI]
rs7163931	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.86[YRI]
rs11638444	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.964[YRI]
rs6495555	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.967[YRI]
rs8039027	intron_variant; NMD_transcript_variant	0.95[CEU]; 1.0[CHB]; 1.0[JPT]
rs11637363	intron_variant; NMD_transcript_variant; upstream_gene_variant	0.901[CEU]; 1.0[CHB]; 1.0[JPT]
rs7172611	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs11635456	intron_variant; NMD_transcript_variant	1.0[CHB]; 1.0[JPT]
rs11637642	intron_variant; NMD_transcript_variant	0.901[CEU]; 1.0[CHB]; 1.0[JPT]
rs17875556	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[JPT]
rs4128766	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs4616256	intron_variant; NMD_transcript_variant	0.814[CEU]; 1.0[JPT]
rs11636298	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs11630050	intron_variant; NMD_transcript_variant; upstream_gene_variant	0.904[CEU]; 1.0[CHB]; 1.0[JPT]
rs11637813	intron_variant; NMD_transcript_variant	0.876[CEU]; 1.0[CHB]
rs7179134	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs11638043	intron_variant; NMD_transcript_variant; upstream_gene_variant	0.904[CEU]; 1.0[CHB]; 1.0[JPT]
rs17875494	downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant	1.0[JPT]
rs11638115	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]