ADHDgene Database

SNP Report

Basic Info

Name	rs39857 dbSNP Ensembl
Location	Chr5:14329966(Fwd)
Variant Alleles	C/T
Ancestral Allele	T
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000512070) intron_variant(ENST00000344204; ENST00000512070; ENST00000537187; ENST00000509967; ENST00000513206; ENST00000515144) nc_transcript_variant(ENST00000515144)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
TRIO	triple functional domain (PTPRF interacting)	5p14-p15.1	1(0/0/1)

SNPs in LD with rs39857 (count: 1) View in gBrowse (chr5:14329966..14386655 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs42259	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/0/1)	0.899[CEU]