ADHDgene Database
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs3738401 dbSNP Ensembl
Location chr1:231830295(Fwd)
Variant Alleles G/A
Ancestral Allele G
Functional Annotation 3_prime_UTR_variant; 5_prime_UTR_variant; downstream_gene_variant; intron_variant; missense_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant.
Polyphen Annotation: benign(ENST00000295051; ENST00000317586; ENST00000366632' target='_blank'> ENST00000366632; ENST00000366633; ENST00000366636; ENST00000439617; ENST00000535944' target='_blank'> ENST00000535944; ENST00000535983; ENST00000537876; ENST00000539444; ENST00000602281; ENST00000602700' target='_blank'> ENST00000602700; ENST00000602713' target='_blank'> ENST00000602713; ENST00000602822' target='_blank'> ENST00000602822; ENST00000295051; ENST00000366632' target='_blank'> ENST00000366632; ENST00000535944' target='_blank'> ENST00000535944; ENST00000602700' target='_blank'> ENST00000602700; ENST00000602713' target='_blank'> ENST00000602713; ENST00000602822' target='_blank'> ENST00000602822)
SIFT Annotation: tolerated(ENST00000295051; ENST00000317586; ENST00000366632' target='_blank'> ENST00000366632; ENST00000366633; ENST00000366636; ENST00000439617; ENST00000535944' target='_blank'> ENST00000535944; ENST00000535983; ENST00000537876; ENST00000539444; ENST00000602281; ENST00000602700' target='_blank'> ENST00000602700; ENST00000602713' target='_blank'> ENST00000602713; ENST00000602822' target='_blank'> ENST00000602822; ENST00000295051; ENST00000366632' target='_blank'> ENST00000366632; ENST00000535944' target='_blank'> ENST00000535944; ENST00000602700' target='_blank'> ENST00000602700; ENST00000602713' target='_blank'> ENST00000602713; ENST00000602822' target='_blank'> ENST00000602822)
Consequence to Transcript 3_prime_UTR_variant(ENST00000422590; ENST00000602567; ENST00000602634; ENST00000602885; ENST00000602956; ENST00000602962)
5_prime_UTR_variant(ENST00000366637)
downstream_gene_variant(ENST00000602600)
intron_variant(ENST00000602873)
missense_variant(ENST00000295051; ENST00000317586; ENST00000366632; ENST00000366633; ENST00000366636; ENST00000439617; ENST00000535944; ENST00000535983; ENST00000537876; ENST00000539444; ENST00000602281; ENST00000602700; ENST00000602713; ENST00000602822)
nc_transcript_variant(ENST00000468399)
NMD_transcript_variant(ENST00000295051; ENST00000366632; ENST00000535944; ENST00000602700; ENST00000602713; ENST00000602822; ENST00000422590; ENST00000602567; ENST00000602634; ENST00000602885; ENST00000602956; ENST00000602962)
non_coding_exon_variant(ENST00000468399)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Jacobsen, K. K.,2013 chi-square tests P-value=0.47 (OR=1.06;95%CI=0.90-1.26) chi-square tests P-value=0.47 (OR=1.06;95%CI=0.90-1.26) This SNP was not significant associated with ADHD This SNP was not significant associated with ADHD Non-significant

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 1)


SNPs in LD with rs3738401 (count: 32) View in gBrowse (chr1:231820077..231860682 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 32)