ADHDgene Database

SNP Report

Basic Info

Name	rs28898596 dbSNP Ensembl
Location	Chr2:234620640(Fwd)
Variant Alleles	G/A
Ancestral Allele	G
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000446481; ENST00000484784) intron_variant(ENST00000373426; ENST00000354728; ENST00000373445; ENST00000373424; ENST00000344644; ENST00000480628; ENST00000373450; ENST00000446481; ENST00000305139; ENST00000484784; ENST00000406651; ENST00000478062) nc_transcript_variant(ENST00000480628; ENST00000478062) upstream_gene_variant(ENST00000439336; ENST00000373414)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 6)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
UGT1A9	UDP glucuronosyltransferase 1 family, polypeptide A9	2q37	1(0/0/1)

Approved Symbol	Approved Name	Location
UGT1A7	UDP glucuronosyltransferase 1 family, polypeptide A7	2q37
UGT1A10	UDP glucuronosyltransferase 1 family, polypeptide A10	2q37
UGT1A8	UDP glucuronosyltransferase 1 family, polypeptide A8	2q37
UGT1A5	UDP glucuronosyltransferase 1 family, polypeptide A5	2q37
UGT1A6	UDP glucuronosyltransferase 1 family, polypeptide A6	2q37

SNPs in LD with rs28898596 (count: 1) View in gBrowse (chr2:234584324..234620640 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2602381	intron_variant	1(0/0/1)	0.812[CHB]; 0.93[JPT]