SNP Report
Basic Info
Name |
rs2114968
dbSNP
Ensembl
|
Location |
Chr5:175313487(Fwd) |
Variant Alleles |
T/C |
Ancestral Allele |
T |
Functional Annotation |
downstream_gene_variant.
|
Consequence to Transcript |
downstream_gene_variant(ENST00000359546) |
No. of Studies |
1 (significant: 1; non-significant: 0; trend: 0) |
Source |
Literature-origin
|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 12)
rs_ID |
Functional Annotation |
r2[population] |
rs4077871
|
downstream_gene_variant; feature_truncation; intron_variant |
0.839[CEU]; 0.911[TSI]
|
rs3180249
|
3_prime_UTR_variant; downstream_gene_variant |
1.0[CHB]; 0.888[JPT]; 0.821[YRI]
|
rs2382114
|
downstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs1560033
|
intron_variant; upstream_gene_variant |
0.839[CEU]; 0.865[TSI]
|
rs4868543
|
|
0.835[ASW]; 0.888[JPT]; 0.897[MEX]; 0.816[YRI]
|
rs6860661
|
intron_variant |
0.837[CEU]
|
rs4867808
|
intron_variant; upstream_gene_variant |
0.839[CEU]
|
rs10052184
|
5_prime_UTR_variant; intron_variant; upstream_gene_variant |
0.907[TSI]
|
rs11134938
|
intron_variant; upstream_gene_variant |
0.839[CEU]; 0.866[TSI]
|
rs7718100
|
downstream_gene_variant |
0.959[CEU]; 0.877[CHB]; 1.0[JPT]
|
rs871853
|
intron_variant |
0.839[CEU]; 0.822[TSI]
|
rs3892909
|
intron_variant |
0.839[CEU]; 0.889[TSI]
|