ADHDgene Database

SNP Report

Basic Info

Name	rs2052661 dbSNP Ensembl
Location	Chr18:11763020(Fwd)
Variant Alleles	G/C
Ancestral Allele	C
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000590228; ENST00000590972; ENST00000423027; ENST00000334049; ENST00000585642; ENST00000535121; ENST00000269162) nc_transcript_variant(ENST00000590972)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Laurin N, 2008(b)	G/C		TDT P-value=0.259, X²=1.273 TDT P-value=0.259, X²=1.273	no significant evidence of association no significant evidence of association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
GNAL	guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	18p11.22-p11.21	1(1/0/0)

SNPs in LD with rs2052661 (count: 16) View in gBrowse (chr18:11746605..11811601 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs8095592	intron_variant; nc_transcript_variant	1(0/1/0)	0.949[CHB]; 0.939[JPT]

rs_ID	Functional Annotation	r²[population]
rs2866279	intron_variant; nc_transcript_variant	1.0[CHB]; 0.939[JPT]
rs16976632	downstream_gene_variant; intron_variant; upstream_gene_variant	0.815[CHB]; 0.877[JPT]
rs9947295	intron_variant; nc_transcript_variant	1.0[YRI]
rs7359728	intron_variant; nc_transcript_variant; upstream_gene_variant	0.817[CHB]; 0.881[JPT]
rs16976642	intron_variant; nc_transcript_variant	0.807[CHB]
rs2113739	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs8090628	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]; 0.963[YRI]
rs2052660	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs8087789	intron_variant; nc_transcript_variant	0.941[CEU]; 0.9[CHB]; 0.818[JPT]
rs8090320	intron_variant; nc_transcript_variant	0.941[CEU]; 0.817[CHB]
rs8091359	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs9951752	downstream_gene_variant; intron_variant; upstream_gene_variant	0.876[JPT]
rs7240632	intron_variant; nc_transcript_variant; upstream_gene_variant	0.805[CEU]
rs2113738	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.934[YRI]
rs1895689	intron_variant; nc_transcript_variant; upstream_gene_variant	0.949[CHB]; 0.939[JPT]