SNP Report

Basic Info
Name |
rs1792282
dbSNP
Ensembl
|
Location |
Chr11:71135166(Fwd) |
Variant Alleles |
G/A |
Ancestral Allele |
G |
Functional Annotation |
downstream_gene_variant; upstream_gene_variant.
|
Consequence to Transcript |
downstream_gene_variant(ENST00000534795) upstream_gene_variant(ENST00000331301; ENST00000508543) |
No. of Studies |
0 (significant: 0; non-significant: 0; trend: 0) |
Source |
LD-proxy
|

SNP related studies (count: 0)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 7)

|
rs_ID |
Functional Annotation |
#studies(significant/non-significant/trend) |
r2[population] |
rs736894
|
downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/0/1)
|
1.0[CEU]; 0.86[CHB]; 0.902[CHD]; 0.978[GIH]; 0.893[MEX]; 1.0[TSI]
|
rs3750997
|
5_prime_UTR_variant; intron_variant; upstream_gene_variant |
1(0/0/1)
|
0.809[CEU]; 0.872[TSI]
|
rs1630498
|
downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/0/1)
|
1.0[CEU]; 0.907[CHB]; 0.927[CHD]; 1.0[GIH]; 0.864[JPT]; 0.893[MEX]; 1.0[TSI]
|
rs7928249
|
intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/0/1)
|
0.817[TSI]
|
rs12422045
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
1(0/0/1)
|
0.809[CEU]; 0.844[TSI]
|
rs1790324
|
downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/0/1)
|
1.0[CEU]; 0.86[CHB]; 0.902[CHD]; 0.978[GIH]; 0.823[JPT]; 0.893[MEX]; 1.0[TSI]
|
rs11603330
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
1(0/0/1)
|
0.809[CEU]; 0.844[TSI]
|
LD-proxies (count: 0)