ADHDgene Database

SNP Report

Basic Info

Name	rs16902086 dbSNP Ensembl
Location	chr5:45285752(Fwd)
Variant Alleles	A/G
Ancestral Allele	G
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000303230)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Laurin N, 2008(a)	A/G		P-value=0.706 in the catergorical analysis, P-value>0.05 in ...... P-value=0.706 in the catergorical analysis, P-value>0.05 in the quantitative analysis More...	no significant evidence of association no significant evidence of association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
HCN1	hyperpolarization activated cyclic nucleotide-gated potassium channel 1	5p12	1(0/1/0)

SNPs in LD with rs16902086 (count: 20) View in gBrowse (chr5:45090306..45393552 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs6888352	intron_variant	0.881[CHD]; 0.859[JPT]
rs6451798	intron_variant	0.813[CHB]; 0.905[CHD]; 0.855[JPT]
rs6451796	intron_variant	0.813[CHB]; 0.859[JPT]
rs6864928	intron_variant	0.813[CHB]; 0.859[JPT]
rs6874127	intron_variant	0.813[CHB]; 0.905[CHD]; 0.859[JPT]
rs10044408	intron_variant	0.849[JPT]
rs10051592	intron_variant; nc_transcript_variant	0.916[CEU]; 0.898[JPT]; 1.0[MEX]; 0.907[MKK]
rs6895055	intron_variant	0.85[CHB]; 0.859[CHD]; 0.852[JPT]
rs1501362	intron_variant	0.809[CHB]; 0.881[CHD]; 0.857[JPT]
rs10473384	intron_variant	0.809[CHB]; 0.901[CHD]; 0.857[JPT]
rs3923055	intron_variant	0.813[CHB]; 0.859[JPT]
rs10512875		0.953[CHB]; 1.0[JPT]
rs1392973	intron_variant	0.881[CHD]; 0.807[JPT]
rs6874677	intron_variant	0.86[CHB]
rs10035564		0.824[CEU]; 0.886[TSI]; 0.87[ASW]; 0.95[CHB]; 0.828[CHD]; 1.0[JPT]; 0.909[GIH]; 0.849[LWK]; 0.956[MEX]; 0.976[MKK]; 0.851[YRI]
rs9292918	intron_variant	0.813[CHB]; 0.882[CHD]; 0.859[JPT]
rs1501361	intron_variant	0.813[CHB]; 0.905[CHD]; 0.859[JPT]
rs7709262	intron_variant	0.813[CHB]; 0.859[JPT]
rs35804423	intron_variant	0.813[CHB]; 0.905[CHD]; 0.859[JPT]
rs1501357	intron_variant	0.898[CHB]; 0.882[CHD]; 0.897[JPT]