SNP Report

Basic Info
Name |
rs16902086
dbSNP
Ensembl
|
Location |
chr5:45285752(Fwd) |
Variant Alleles |
A/G |
Ancestral Allele |
G |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000303230) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 20)

rs_ID |
Functional Annotation |
r2[population] |
rs10473384
|
intron_variant |
0.809[CHB]; 0.901[CHD]; 0.857[JPT]
|
rs1501357
|
intron_variant |
0.898[CHB]; 0.882[CHD]; 0.897[JPT]
|
rs7709262
|
intron_variant |
0.813[CHB]; 0.859[JPT]
|
rs10051592
|
intron_variant; nc_transcript_variant |
0.916[CEU]; 0.898[JPT]; 1.0[MEX]; 0.907[MKK]
|
rs1392973
|
intron_variant |
0.881[CHD]; 0.807[JPT]
|
rs6888352
|
intron_variant |
0.881[CHD]; 0.859[JPT]
|
rs10044408
|
intron_variant |
0.849[JPT]
|
rs6874127
|
intron_variant |
0.813[CHB]; 0.905[CHD]; 0.859[JPT]
|
rs6864928
|
intron_variant |
0.813[CHB]; 0.859[JPT]
|
rs9292918
|
intron_variant |
0.813[CHB]; 0.882[CHD]; 0.859[JPT]
|
rs1501361
|
intron_variant |
0.813[CHB]; 0.905[CHD]; 0.859[JPT]
|
rs6451798
|
intron_variant |
0.813[CHB]; 0.905[CHD]; 0.855[JPT]
|
rs35804423
|
intron_variant |
0.813[CHB]; 0.905[CHD]; 0.859[JPT]
|
rs6874677
|
intron_variant |
0.86[CHB]
|
rs6895055
|
intron_variant |
0.85[CHB]; 0.859[CHD]; 0.852[JPT]
|
rs10035564
|
|
0.824[CEU]; 0.886[TSI]; 0.87[ASW]; 0.95[CHB]; 0.828[CHD]; 1.0[JPT]; 0.909[GIH]; 0.849[LWK]; 0.956[MEX]; 0.976[MKK]; 0.851[YRI]
|
rs6451796
|
intron_variant |
0.813[CHB]; 0.859[JPT]
|
rs1501362
|
intron_variant |
0.809[CHB]; 0.881[CHD]; 0.857[JPT]
|
rs10512875
|
|
0.953[CHB]; 1.0[JPT]
|
rs3923055
|
intron_variant |
0.813[CHB]; 0.859[JPT]
|