ADHDgene Database

SNP Report

Basic Info

Name	rs1478442 dbSNP Ensembl
Location	Chr5:52209963(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000282588; ENST00000504669) nc_transcript_variant(ENST00000504669)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Laurin N, 2008(a)	A/G		P-value=0.485 in the catergorical analysis, P-value>0.05 in ...... P-value=0.485 in the catergorical analysis, P-value>0.05 in the quantitative analysis More...	no significant evidence of association no significant evidence of association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
ITGA1	integrin, alpha 1	5q11.1	1(0/1/0)

SNPs in LD with rs1478442 (count: 3) View in gBrowse (chr5:52203235..52215178 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs1478439	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[ASW]; 1.0[CEU]; 0.977[GIH]; 0.946[JPT]; 0.836[LWK]; 1.0[MEX]; 1.0[MKK]; 0.966[TSI]; 1.0[YRI]
rs12652105	intron_variant; nc_transcript_variant	1.0[CEU]; 0.946[JPT]; 1.0[YRI]
rs2279585	intron_variant; nc_transcript_variant	1.0[CEU]; 0.83[GIH]; 0.843[JPT]; 0.956[MEX]; 0.935[TSI]