SNP Report

Basic Info
Name |
rs13078807
dbSNP
Ensembl
|
Location |
chr3:85884150(Fwd) |
Variant Alleles |
A/G |
Ancestral Allele |
A |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000383699; ENST00000405615; ENST00000407528) |
No. of Studies |
1 (significant: 1; non-significant: 0; trend: 0) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 34)

rs_ID |
Functional Annotation |
r2[population] |
rs9852859
|
intron_variant |
1.0[CEU]; 0.938[TSI]; 1.0[ASW]; 1.0[GIH]; 1.0[MKK]; 1.0[YRI]
|
rs9852127
|
intron_variant |
1.0[CEU]; 1.0[YRI]
|
rs13068138
|
intron_variant |
1.0[CEU]; 1.0[YRI]
|
rs13096280
|
intron_variant |
1.0[CHD]; 0.906[MKK]
|
rs9309995
|
intron_variant |
1.0[CHD]; 0.829[LWK]; 1.0[YRI]
|
rs11926524
|
intron_variant; nc_transcript_variant |
1.0[CEU]
|
rs7640855
|
intron_variant; nc_transcript_variant |
1.0[CEU]; 1.0[YRI]
|
rs13078960
|
intron_variant |
1.0[CEU]; 1.0[YRI]
|
rs11915638
|
intron_variant; upstream_gene_variant |
0.907[TSI]
|
rs9818122
|
intron_variant; nc_transcript_variant |
0.887[CEU]; 0.88[TSI]; 1.0[CHD]
|
rs13059866
|
intron_variant |
1.0[CHD]; 1.0[MKK]
|
rs2122042
|
intron_variant; nc_transcript_variant |
0.887[CEU]; 0.88[TSI]
|
rs1597213
|
intron_variant; nc_transcript_variant; non_coding_exon_variant |
0.887[CEU]
|
rs9826482
|
intron_variant; nc_transcript_variant |
1.0[CEU]
|
rs7638804
|
downstream_gene_variant; intron_variant |
1.0[YRI]
|
rs9309990
|
intron_variant |
1.0[CEU]; 1.0[YRI]
|
rs9852478
|
intron_variant |
1.0[CEU]; 1.0[YRI]
|
rs9309994
|
intron_variant |
1.0[CEU]; 1.0[YRI]
|
rs9309991
|
intron_variant |
1.0[CEU]; 1.0[YRI]
|
rs12714637
|
intron_variant |
1.0[CEU]; 1.0[YRI]
|
rs9834708
|
intron_variant |
1.0[CHD]; 0.951[MKK]
|
rs9877300
|
intron_variant |
1.0[CHD]; 0.829[LWK]; 1.0[YRI]
|
rs9820014
|
intron_variant |
1.0[CEU]; 1.0[YRI]
|
rs17355368
|
intron_variant; nc_transcript_variant |
1.0[CEU]; 1.0[YRI]
|
rs7622475
|
intron_variant |
1.0[CEU]; 0.969[TSI]; 1.0[ASW]; 1.0[CHD]; 1.0[GIH]; 0.829[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[YRI]
|
rs7355953
|
intron_variant |
1.0[ASW]; 1.0[CHD]; 1.0[MKK]
|
rs13098327
|
intron_variant |
1.0[CEU]; 0.969[TSI]; 1.0[ASW]; 1.0[GIH]; 0.829[LWK]; 0.889[MEX]; 0.848[MKK]; 1.0[YRI]
|
rs9869320
|
intron_variant |
1.0[CEU]; 1.0[YRI]
|
rs1448612
|
intron_variant; nc_transcript_variant |
1.0[CEU]; 1.0[YRI]
|
rs7640660
|
intron_variant; nc_transcript_variant; non_coding_exon_variant |
0.887[CEU]; 0.88[TSI]; 1.0[CHD]
|
rs12714640
|
intron_variant; nc_transcript_variant; non_coding_exon_variant |
1.0[CEU]; 0.969[TSI]; 1.0[ASW]; 1.0[CHD]; 1.0[GIH]; 0.829[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[YRI]
|
rs9835772
|
intron_variant; NMD_transcript_variant |
1.0[CHD]; 0.951[MKK]
|
rs7620339
|
intron_variant; nc_transcript_variant |
0.838[CEU]; 0.88[TSI]; 1.0[CHD]
|
rs13327074
|
intron_variant |
1.0[CHD]; 1.0[YRI]
|