ADHDgene Database

SNP Report

Basic Info

Name	rs12679254 dbSNP Ensembl
Location	Chr8:74274191(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000518355; ENST00000519134) nc_transcript_variant(ENST00000518355; ENST00000519134)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Lasky-Su J, 2008			P-value=2.08E-06 under Recessive model for FBAT-PC IA sympto...... P-value=2.08E-06 under Recessive model for FBAT-PC IA symptoms More...	association finding with P-value association finding with P-value	Trend

SNP related genes (count: 0)

SNPs in LD with rs12679254 (count: 12) View in gBrowse (chr8:74263630..74278680 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs12334531	intron_variant; nc_transcript_variant	0.839[MEX]
rs16938626	downstream_gene_variant	0.896[CEU]; 0.951[CHB]; 0.953[JPT]
rs16938627	downstream_gene_variant	0.901[CHB]; 0.846[GIH]; 0.909[JPT]; 0.834[MEX]
rs2383901	nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	0.908[CHB]; 0.815[JPT]
rs12548090	intron_variant; nc_transcript_variant; upstream_gene_variant	0.908[CHB]
rs10957658	intron_variant; nc_transcript_variant; upstream_gene_variant	0.862[CEU]; 0.862[CHB]; 1.0[YRI]
rs2383904	downstream_gene_variant	0.953[CHB]; 1.0[JPT]; 1.0[YRI]
rs12678600	intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 0.906[JPT]; 1.0[YRI]
rs2383903	downstream_gene_variant	0.86[CEU]; 0.953[CHB]; 1.0[JPT]; 1.0[YRI]
rs1807080	upstream_gene_variant	0.908[CHB]; 0.815[JPT]
rs13265054	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 0.904[JPT]
rs16938624	intron_variant; nc_transcript_variant; upstream_gene_variant	0.889[CEU]; 1.0[CHB]; 0.895[JPT]