ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs12576775 dbSNP Ensembl
Location	chr11:79077193(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000278550; ENST00000528688; ENST00000531583) nc_transcript_variant(ENST00000528688; ENST00000531583)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Schimmelmann, B. G.,2013			Nominal two-sided P-value=0.826 (OR=0.98;95%CI=0.80-1.20) Nominal two-sided P-value=0.826 (OR=0.98;95%CI=0.80-1.20)	No evidence for association was found with ADHD for the rema...... No evidence for association was found with ADHD for the remaining eight SNPs, which were found to be genome-wide significant for BD in international GWAS More...	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
TENM4	teneurin transmembrane protein 4	11q13	1(0/1/0)

Genes from other sources (count: 0)

SNPs in LD with rs12576775 (count: 26) View in gBrowse (chr11:79057097..79121342 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 26)

rs_ID	Functional Annotation	r²[population]
rs11237796	intron_variant; nc_transcript_variant	0.875[CEU]; 0.825[TSI]
rs11237805	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs12279388	intron_variant; nc_transcript_variant	0.898[CEU]; 0.823[CHB]
rs1944449	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs1533126	intron_variant; nc_transcript_variant	1.0[JPT]
rs12275195	intron_variant; nc_transcript_variant	0.822[CHB]; 1.0[JPT]
rs12577328	intron_variant; nc_transcript_variant	1.0[CHB]; 0.883[CHD]; 1.0[JPT]
rs11237799	intron_variant; nc_transcript_variant	0.936[CEU]; 0.955[TSI]; 1.0[CHB]; 0.87[CHD]; 1.0[JPT]; 0.898[MEX]
rs7108878	intron_variant; nc_transcript_variant	0.823[CHB]; 1.0[JPT]
rs11826953	intron_variant; nc_transcript_variant	0.817[YRI]
rs12289486	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs12286448	intron_variant; nc_transcript_variant	0.846[CHB]; 0.883[CHD]; 1.0[JPT]
rs17138171	intron_variant; nc_transcript_variant	0.936[CEU]; 0.911[TSI]; 1.0[CHB]; 0.87[CHD]; 1.0[JPT]; 0.898[MEX]
rs11237815	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs11237821	intron_variant; nc_transcript_variant	0.846[CHB]; 1.0[JPT]
rs4515997	intron_variant; nc_transcript_variant	1.0[JPT]
rs17138230	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[TSI]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 1.0[MEX]; 0.944[MKK]
rs10501439	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs12290811	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs954129	intron_variant; nc_transcript_variant	0.875[CEU]; 0.825[TSI]
rs12577093	intron_variant; nc_transcript_variant	0.875[CEU]
rs12277834	intron_variant; nc_transcript_variant	0.846[CHB]; 1.0[JPT]
rs1511237	intron_variant; nc_transcript_variant; upstream_gene_variant	0.846[CHB]; 1.0[JPT]
rs11237820	intron_variant; nc_transcript_variant	0.823[CHB]; 1.0[JPT]
rs7932890	intron_variant; nc_transcript_variant	0.936[CEU]; 0.955[TSI]; 1.0[CHB]; 0.87[CHD]; 1.0[JPT]; 0.813[MEX]
rs1107993	intron_variant; nc_transcript_variant	0.817[YRI]