ADHDgene Database

SNP Report

Basic Info

Name	rs12557556 dbSNP Ensembl
Location	ChrX:7014985(Fwd)
Variant Alleles	C/T
Ancestral Allele	T
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000498474; ENST00000486446; ENST00000540122; ENST00000412827; ENST00000381077; ENST00000424830) nc_transcript_variant(ENST00000498474)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location
HDHD1	haloacid dehalogenase-like hydrolase domain containing 1	Xp22.32

SNPs in LD with rs12557556 (count: 4) View in gBrowse (chrX:7014985..7169518 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs5934769	intron_variant	1(1/0/0)	0.9[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.928[JPT]; 1.0[MEX]; 1.0[TSI]
rs5934740	intron_variant	2(0/2/0)	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs1473666	downstream_gene_variant; intron_variant; nc_transcript_variant	1(0/1/0)	1.0[CHD]; 1.0[GIH]; 0.932[LWK]; 1.0[YRI]
rs6639786	intron_variant	1(1/0/0)	0.9[CEU]; 0.932[CHB]; 1.0[CHD]; 0.863[GIH]; 0.928[JPT]; 1.0[TSI]