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Keyword:
Type:
SNP
Gene
Region
Pathway
Study(PMID)
Large-scale studies
Genome-wide Association Studies of ADHD
Genome-wide Linkage Studies of ADHD
Genome-wide CNV Analyses of ADHD
Meta-analysis Studies of ADHD
Data Summary
Published Variant
SNP:
1391
CNV:
398
Others:
173
Published Gene:
359
Published Region:
128
Pathway by PBA:
8
Study:
361
Detail ...
SNP Report
Basic Info
Name
rs12434842
dbSNP
Ensembl
Location
chr14:48830461(Fwd)
Variant Alleles
T/C
Ancestral Allele
T
No. of Studies
1 (significant: 0; non-significant: 1; trend: 0)
Source
Literature-origin
SNP related studies (count: 1)
Reference
Allele Change
Risk Allele
Statistical Values
Author Comments
Result of Statistical Analysis
Yang L, 2013
P-value=0.0000634
P-value=0.0000634
The SNPs associated with P values of 1E-5 or lower
The SNPs associated with P values of 1E-5 or lower
Non-significant
SNP related genes (count: 0)
SNPs in LD with rs12434842 (count: 81)
View in gBrowse (chr14:48679839..48904901 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold
r
2
>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 81)
rs_ID
Functional Annotation
r
2
[population]
rs1769526
0.862[CHD]; 0.941[JPT]
rs11846619
downstream_gene_variant; intron_variant; nc_transcript_variant
1.0[CEU]; 0.937[CHB]; 1.0[JPT]
rs10141253
0.94[CHB]; 1.0[JPT]
rs10148865
0.821[CHB]; 0.827[CHD]; 0.879[JPT]
rs17120095
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs8004221
0.941[JPT]
rs1769502
0.937[JPT]
rs11626358
1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs10142079
intron_variant; nc_transcript_variant; non_coding_exon_variant
0.885[CHB]; 0.902[CHD]; 1.0[JPT]
rs10498401
0.941[JPT]
rs4572292
0.912[JPT]
rs17119861
1.0[TSI]; 0.825[JPT]
rs10498402
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs2416160
0.941[JPT]
rs12434196
1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 1.0[CHB]; 0.966[CHD]; 1.0[JPT]; 1.0[GIH]
rs11626418
1.0[CHB]; 1.0[JPT]
rs1769522
0.94[CHB]; 1.0[JPT]
rs7494430
0.927[JPT]
rs11623141
1.0[CEU]; 1.0[TSI]; 1.0[CHB]; 0.933[CHD]; 1.0[JPT]; 1.0[GIH]; 0.834[LWK]; 1.0[MEX]
rs1769536
0.941[JPT]
rs17120022
0.862[CHD]; 0.941[JPT]
rs11157633
downstream_gene_variant; intron_variant; nc_transcript_variant
0.885[CHB]; 0.902[CHD]; 1.0[JPT]
rs2900024
0.823[CHD]; 0.878[JPT]
rs1440394
0.884[CHB]; 1.0[JPT]
rs9671875
1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 1.0[CHB]; 0.933[CHD]; 1.0[JPT]; 1.0[GIH]; 1.0[MEX]; 0.867[YRI]
rs11627319
1.0[CEU]; 0.821[CHB]; 0.939[JPT]
rs11624500
1.0[CEU]
rs1660218
0.862[CHD]; 0.941[JPT]
rs17120024
1.0[CEU]; 0.821[CHB]; 0.941[JPT]
rs4620879
0.862[CHD]; 0.941[JPT]
rs17120020
0.941[JPT]
rs11622110
1.0[CHB]; 0.932[JPT]; 1.0[YRI]
rs11623685
0.809[CHB]; 0.932[JPT]
rs10132526
upstream_gene_variant
0.94[CHB]; 1.0[JPT]
rs1769561
0.862[CHD]; 0.941[JPT]
rs1660229
0.829[CHD]; 0.934[JPT]
rs1769551
0.879[JPT]
rs11157628
0.859[CHD]; 0.941[JPT]
rs11621694
upstream_gene_variant
1.0[CEU]; 0.867[CHB]; 1.0[JPT]
rs7158518
intron_variant; nc_transcript_variant
0.885[CHB]; 0.902[CHD]; 1.0[JPT]
rs1660227
0.941[JPT]
rs4516133
0.871[CHB]; 0.869[JPT]
rs1660230
0.941[JPT]
rs11157632
downstream_gene_variant; intron_variant; nc_transcript_variant
1.0[CEU]; 1.0[TSI]; 0.94[CHB]; 0.933[CHD]; 1.0[JPT]; 1.0[GIH]; 1.0[MEX]
rs17120078
1.0[CEU]; 0.94[CHB]; 1.0[JPT]; 1.0[YRI]
rs8007486
intron_variant; nc_transcript_variant
0.819[CHB]
rs12435149
0.862[CHD]; 0.941[JPT]
rs10140631
0.873[JPT]
rs12435048
0.932[JPT]
rs10140277
0.935[CHB]; 0.902[CHD]; 1.0[JPT]
rs12589623
downstream_gene_variant; upstream_gene_variant
0.884[CHB]; 0.902[CHD]; 1.0[JPT]
rs10134842
downstream_gene_variant; upstream_gene_variant
0.885[CHB]; 1.0[JPT]
rs17092746
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs11624497
1.0[CEU]; 0.879[JPT]
rs10138985
0.94[CHB]; 1.0[JPT]
rs11621785
0.875[JPT]
rs11627856
0.94[CHB]; 0.928[CHD]; 1.0[JPT]
rs10137289
0.879[JPT]
rs7158099
downstream_gene_variant
0.862[CHD]; 0.941[JPT]
rs12437438
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs11622631
1.0[CEU]; 0.931[JPT]
rs17120044
1.0[CEU]; 1.0[TSI]; 0.821[CHB]; 0.895[CHD]; 0.941[JPT]; 0.808[GIH]
rs12435928
downstream_gene_variant; upstream_gene_variant
1.0[CEU]; 0.94[CHB]; 0.94[JPT]
rs17120085
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs7147139
downstream_gene_variant; intron_variant; nc_transcript_variant
0.885[CHB]; 0.902[CHD]; 1.0[JPT]; 0.826[GIH]
rs11623754
1.0[CEU]; 0.938[JPT]
rs1769496
0.939[JPT]
rs1621025
0.902[CHD]; 1.0[JPT]
rs7150200
0.825[JPT]
rs2218185
0.93[JPT]
rs17120089
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs12436528
1.0[CEU]; 1.0[TSI]; 0.821[CHB]; 0.941[JPT]
rs17120067
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs1837551
0.885[CHB]; 0.902[CHD]; 1.0[JPT]; 0.834[GIH]
rs17119901
1.0[TSI]; 0.861[CHD]; 0.879[JPT]
rs1617416
0.862[CHD]; 0.941[JPT]
rs12437282
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs1660208
0.862[CHD]; 0.941[JPT]
rs1769531
0.938[JPT]
rs1769557
0.862[CHD]; 0.941[JPT]
rs41391849
1.0[TSI]; 0.935[CHB]; 0.902[CHD]; 1.0[JPT]; 0.938[GIH]; 1.0[MEX]