ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs12434842 dbSNP Ensembl
Location	chr14:48830461(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Yang L, 2013			P-value=0.0000634 P-value=0.0000634	The SNPs associated with P values of 1E-5 or lower The SNPs associated with P values of 1E-5 or lower	Non-significant

SNP related genes (count: 0)

SNPs in LD with rs12434842 (count: 81) View in gBrowse (chr14:48679839..48904901 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 81)

rs_ID	Functional Annotation	r²[population]
rs11846619	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 0.937[CHB]; 1.0[JPT]
rs10142079	intron_variant; nc_transcript_variant; non_coding_exon_variant	0.885[CHB]; 0.902[CHD]; 1.0[JPT]
rs17120022		0.862[CHD]; 0.941[JPT]
rs1621025		0.902[CHD]; 1.0[JPT]
rs17119901		1.0[TSI]; 0.861[CHD]; 0.879[JPT]
rs1769531		0.938[JPT]
rs11627319		1.0[CEU]; 0.821[CHB]; 0.939[JPT]
rs12589623	downstream_gene_variant; upstream_gene_variant	0.884[CHB]; 0.902[CHD]; 1.0[JPT]
rs11157632	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[TSI]; 0.94[CHB]; 0.933[CHD]; 1.0[JPT]; 1.0[GIH]; 1.0[MEX]
rs7150200		0.825[JPT]
rs11157628		0.859[CHD]; 0.941[JPT]
rs10141253		0.94[CHB]; 1.0[JPT]
rs8004221		0.941[JPT]
rs17119861		1.0[TSI]; 0.825[JPT]
rs7494430		0.927[JPT]
rs4620879		0.862[CHD]; 0.941[JPT]
rs17120085		1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs1769526		0.862[CHD]; 0.941[JPT]
rs11624497		1.0[CEU]; 0.879[JPT]
rs11624500		1.0[CEU]
rs1660218		0.862[CHD]; 0.941[JPT]
rs11626418		1.0[CHB]; 1.0[JPT]
rs2900024		0.823[CHD]; 0.878[JPT]
rs9671875		1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 1.0[CHB]; 0.933[CHD]; 1.0[JPT]; 1.0[GIH]; 1.0[MEX]; 0.867[YRI]
rs1660230		0.941[JPT]
rs1660229		0.829[CHD]; 0.934[JPT]
rs10148865		0.821[CHB]; 0.827[CHD]; 0.879[JPT]
rs10138985		0.94[CHB]; 1.0[JPT]
rs11621785		0.875[JPT]
rs1617416		0.862[CHD]; 0.941[JPT]
rs12434196		1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 1.0[CHB]; 0.966[CHD]; 1.0[JPT]; 1.0[GIH]
rs10140631		0.873[JPT]
rs11623685		0.809[CHB]; 0.932[JPT]
rs4572292		0.912[JPT]
rs1769557		0.862[CHD]; 0.941[JPT]
rs1769561		0.862[CHD]; 0.941[JPT]
rs10498402		1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs2416160		0.941[JPT]
rs1769502		0.937[JPT]
rs10134842	downstream_gene_variant; upstream_gene_variant	0.885[CHB]; 1.0[JPT]
rs7158099	downstream_gene_variant	0.862[CHD]; 0.941[JPT]
rs11623141		1.0[CEU]; 1.0[TSI]; 1.0[CHB]; 0.933[CHD]; 1.0[JPT]; 1.0[GIH]; 0.834[LWK]; 1.0[MEX]
rs11621694	upstream_gene_variant	1.0[CEU]; 0.867[CHB]; 1.0[JPT]
rs8007486	intron_variant; nc_transcript_variant	0.819[CHB]
rs17120020		0.941[JPT]
rs10140277		0.935[CHB]; 0.902[CHD]; 1.0[JPT]
rs17120024		1.0[CEU]; 0.821[CHB]; 0.941[JPT]
rs10137289		0.879[JPT]
rs17120078		1.0[CEU]; 0.94[CHB]; 1.0[JPT]; 1.0[YRI]
rs17092746		1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs1769496		0.939[JPT]
rs1769522		0.94[CHB]; 1.0[JPT]
rs12435149		0.862[CHD]; 0.941[JPT]
rs17120095		1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs17120089		1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs11622110		1.0[CHB]; 0.932[JPT]; 1.0[YRI]
rs41391849		1.0[TSI]; 0.935[CHB]; 0.902[CHD]; 1.0[JPT]; 0.938[GIH]; 1.0[MEX]
rs11157633	downstream_gene_variant; intron_variant; nc_transcript_variant	0.885[CHB]; 0.902[CHD]; 1.0[JPT]
rs11622631		1.0[CEU]; 0.931[JPT]
rs12437438		1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs12436528		1.0[CEU]; 1.0[TSI]; 0.821[CHB]; 0.941[JPT]
rs4516133		0.871[CHB]; 0.869[JPT]
rs11627856		0.94[CHB]; 0.928[CHD]; 1.0[JPT]
rs1837551		0.885[CHB]; 0.902[CHD]; 1.0[JPT]; 0.834[GIH]
rs1660208		0.862[CHD]; 0.941[JPT]
rs11626358		1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs17120044		1.0[CEU]; 1.0[TSI]; 0.821[CHB]; 0.895[CHD]; 0.941[JPT]; 0.808[GIH]
rs7147139	downstream_gene_variant; intron_variant; nc_transcript_variant	0.885[CHB]; 0.902[CHD]; 1.0[JPT]; 0.826[GIH]
rs12435928	downstream_gene_variant; upstream_gene_variant	1.0[CEU]; 0.94[CHB]; 0.94[JPT]
rs1769536		0.941[JPT]
rs10498401		0.941[JPT]
rs1769551		0.879[JPT]
rs12435048		0.932[JPT]
rs11623754		1.0[CEU]; 0.938[JPT]
rs12437282		1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs1660227		0.941[JPT]
rs10132526	upstream_gene_variant	0.94[CHB]; 1.0[JPT]
rs1440394		0.884[CHB]; 1.0[JPT]
rs17120067		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs2218185		0.93[JPT]
rs7158518	intron_variant; nc_transcript_variant	0.885[CHB]; 0.902[CHD]; 1.0[JPT]