SNP Report

Basic Info
Name |
rs11590090
dbSNP
Ensembl
|
Location |
Chr1:113313563(Fwd) |
Variant Alleles |
C/A |
Ancestral Allele |
T |
No. of Studies |
1 (significant: 0; non-significant: 0; trend: 1) |
Source |
Literature-origin
|

SNP related studies (count: 1)

SNP related genes (count: 0)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 11)

rs_ID |
Functional Annotation |
r2[population] |
rs4381183
|
upstream_gene_variant |
0.904[JPT]
|
rs7553091
|
downstream_gene_variant |
1.0[CEU]; 1.0[JPT]; 0.889[YRI]
|
rs6681499
|
|
1.0[CHB]; 0.852[CHD]; 0.897[JPT]
|
rs12733192
|
|
1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.852[LWK]; 1.0[MEX]; 0.901[MKK]; 1.0[TSI]; 0.9[YRI]
|
rs11584214
|
|
0.823[CHB]; 0.904[JPT]
|
rs10857975
|
|
1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.921[LWK]; 1.0[MEX]; 0.883[MKK]; 0.976[TSI]; 0.816[YRI]
|
rs4534375
|
upstream_gene_variant |
0.904[JPT]
|
rs6683234
|
|
1.0[CHB]; 1.0[JPT]; 0.9[YRI]
|
rs12758837
|
|
1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 1.0[TSI]
|
rs6682219
|
|
1.0[CHB]; 0.852[CHD]; 0.897[JPT]
|
rs6686669
|
|
1.0[CHB]
|