ADHDgene Database

SNP Report

Basic Info

Name	rs11590090 dbSNP Ensembl
Location	chr1:113313563(Fwd)
Variant Alleles	C/A
Ancestral Allele	T
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Lasky-Su J, 2008			P-value=2.51E-06 under Recessive model for HI symptom count P-value=2.51E-06 under Recessive model for HI symptom count	association finding with P-value association finding with P-value	Trend

SNP related genes (count: 0)

SNPs in LD with rs11590090 (count: 11) View in gBrowse (chr1:113281211..113336905 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs12733192		1.0[CEU]; 1.0[TSI]; 1.0[ASW]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 0.852[LWK]; 1.0[MEX]; 0.901[MKK]; 0.9[YRI]
rs12758837		1.0[CEU]; 1.0[TSI]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 1.0[MEX]
rs4534375	upstream_gene_variant	0.904[JPT]
rs7553091	downstream_gene_variant	1.0[CEU]; 1.0[JPT]; 0.889[YRI]
rs4381183	upstream_gene_variant	0.904[JPT]
rs6686669		1.0[CHB]
rs6682219		1.0[CHB]; 0.852[CHD]; 0.897[JPT]
rs11584214		0.823[CHB]; 0.904[JPT]
rs6681499		1.0[CHB]; 0.852[CHD]; 0.897[JPT]
rs6683234		1.0[CHB]; 1.0[JPT]; 0.9[YRI]
rs10857975		1.0[CEU]; 0.976[TSI]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 1.0[GIH]; 0.921[LWK]; 1.0[MEX]; 0.883[MKK]; 0.816[YRI]