ADHDgene Database

SNP Report

Basic Info

Name	rs10011926 dbSNP Ensembl
Location	Chr4:111026927(Fwd)
Variant Alleles	C/T
Ancestral Allele	T
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000514184) intron_variant(ENST00000394607; ENST00000302274; ENST00000514184; ENST00000503885; ENST00000506461; ENST00000506625) nc_transcript_variant(ENST00000506461)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Mick E, 2010		A	TDT P-value=8.07E-06 (OR=0.67) TDT P-value=8.07E-06 (OR=0.67)	One of the top 20 associations from genome-wide association ...... One of the top 20 associations from genome-wide association results; annotated by GWAS Catalog More...	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
ELOVL6	ELOVL fatty acid elongase 6	4q25	1(0/0/1)

SNPs in LD with rs10011926 (count: 8) View in gBrowse (chr4:111019636..111031236 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs1482469	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.879[CEU]; 1.0[CHB]; 1.0[JPT]; 0.963[YRI]
rs10018930	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.831[ASW]; 0.879[CEU]; 1.0[CHB]; 1.0[CHD]; 0.882[GIH]; 1.0[JPT]; 0.968[LWK]; 0.856[MEX]; 0.983[MKK]; 0.927[YRI]
rs7669237	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[ASW]; 0.936[CEU]; 1.0[CHB]; 1.0[CHD]; 0.975[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.855[MKK]; 0.968[TSI]; 0.928[YRI]
rs3733623	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 0.972[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.934[MKK]; 0.904[TSI]; 1.0[YRI]
rs718815	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs10032613	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[ASW]; 0.936[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.872[LWK]; 1.0[MEX]; 0.855[MKK]; 0.968[TSI]; 0.895[YRI]
rs10033229	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.879[CEU]; 1.0[CHB]; 1.0[CHD]; 0.843[GIH]; 1.0[JPT]; 0.814[MEX]
rs4698810	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[ASW]; 0.936[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.854[MKK]; 0.968[TSI]; 0.963[YRI]